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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
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2.3 years ago Johannes Rainer ★ 2.0k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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3.1 years ago shepherl 3.4k
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5
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Not latest package version through 'BiocManager::install()'
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3.2 years ago wang.lingjue • 0
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Scans vs Spectra
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4.6 years ago Ed Siefker ▴ 230
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Thermo Xcalibur RAW data to MGF
mass spectrometry massspectrometry
updated 4.7 years ago by 1.6k • written 4.7 years ago by ▴ 10
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R function to deconvolve ESI MS spectra of multiple charge large biopolymers
mass spectrometry R mzR
4.8 years ago andreas.breidbach • 0
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MAIT or Specmine
metabolomics mait specmine mass spectrometry
5.3 years ago bhgyu ▴ 30
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
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5.6 years ago • updated 5.5 years ago Laurent Gatto 1.6k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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6.0 years ago Laurent Gatto 1.6k
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News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics tutorial mass spectrometry computational biology News
7.0 years ago Olga Vitek ▴ 40
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Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
7.0 years ago Titan • 0
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
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DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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