Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
methylPipe
•
reset
1
vote
8
replies
2.0k
views
methylPipe meth.call issue with sorted SAM file
methylpipe
updated 3.1 years ago by
Macarena
• 0 • written 7.9 years ago by
slbattle
▴ 10
0
votes
2
replies
984
views
methylPipe: how BSprepare handles zeros
methylation
methylPipe
updated 6.5 years ago by
mattia pelizzola
▴ 200 • written 6.5 years ago by
jonathan.moore
• 0
0
votes
2
replies
1.0k
views
MethylPipe pvalue output
MethylPipe
updated 8.0 years ago by
kamal.fartiyal84
▴ 10 • written 8.0 years ago by
746458071
• 0
0
votes
0
replies
790
views
Methylpipe function pool.reads gives syntax error
methylpipe
8.2 years ago
pirona
• 0
4 results • Page
1 of 1
Recent ...
Replies
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Awards
• All
Popular Question
to
Gyan Prakash Mishra
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Michael Love
42k
Popular Question
to
Malcolm Cook
★ 1.6k
Locations
• All
United States,
28 minutes ago
United States,
54 minutes ago
South Korea,
55 minutes ago
Melbourne, Australia,
58 minutes ago
Colombia,
1 hour ago
Traffic: 521 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6