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methylPipe
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methylPipe meth.call issue with sorted SAM file
methylpipe
updated 3.2 years ago by
Macarena
• 0 • written 7.9 years ago by
slbattle
▴ 10
0
votes
2
replies
1.0k
views
MethylPipe pvalue output
MethylPipe
updated 8.1 years ago by
kamal.fartiyal84
▴ 10 • written 8.1 years ago by
746458071
• 0
0
votes
2
replies
999
views
methylPipe: how BSprepare handles zeros
methylation
methylPipe
updated 6.6 years ago by
mattia pelizzola
▴ 200 • written 6.6 years ago by
jonathan.moore
• 0
0
votes
0
replies
799
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Methylpipe function pool.reads gives syntax error
methylpipe
8.2 years ago
pirona
• 0
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Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Answer: ChAMP not available for bioconductor 3.19
by
shepherl
3.9k
See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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