Bioconductor Minion

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ioniser bioinformatics minion

updated 7.3 years ago by Lescai, Francesco ▴ 380 • written 7.8 years ago by nathaniellegall • 0

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IONiseR Minion

updated 8.0 years ago by Mike Smith ★ 6.6k • written 8.0 years ago by christophe.klopp • 0

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IONizeR MinION fast5

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by playerraa • 0

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Answer: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k

voom is a DE analysis method rather than a normalization method. voom expects the design matrix to be the same complete design matrix that …

Comment: enrichGOgradient color change by lewis.roper • 0

I know you submitted this months ago but you're an absolute lifesaver mate, thank you

Comment: Warning message when running limma with covariates by Chris ▴ 20

Hi @gordonsmyth. Happy New Year! Wishing you all the best in 2025. Thank you so much for your kind support!

Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

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Answer: enrichGOgradient color change

How do I fix an odd voom plot in a combined dataset?

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