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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer MLInterfaces bridge ensemblVEP AnnotationHub Cancer MLInterfaces bridge ensemblVEP
11.9 years ago Valerie Obenchain ★ 6.8k
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How to best include hyperparameter optimization in MLInterfaces?
MLInterfaces MLInterfaces
updated 12.7 years ago by 6.7k • written 12.7 years ago by ★ 13k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
13.1 years ago McGee, Monnie ▴ 300
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xvalSpec('NOTEST') problem
MLInterfaces MLInterfaces
updated 13.6 years ago by 6.7k • written 13.6 years ago by ▴ 440
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Need help with MLearn in MLInterfaces package
Clustering MLInterfaces Clustering MLInterfaces
updated 16.8 years ago by 6.7k • written 16.8 years ago by ▴ 10
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
17.9 years ago Vincent J. Carey, Jr. 6.7k
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stat.diag.daB MLInterfaces
Classification MLInterfaces Classification MLInterfaces
19.1 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Biobase MLInterfaces Biobase MLInterfaces
19.2 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Survival Biobase genefilter MLInterfaces Survival Biobase genefilter MLInterfaces
19.2 years ago Martin Morgan 25k
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xval in MLInterfaces package
MLInterfaces MLInterfaces
updated 19.5 years ago by 25k • written 19.5 years ago by ▴ 350
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MLInterfaces
GeneSpring MLInterfaces GeneSpring MLInterfaces
updated 19.8 years ago by ★ 1.0k • written 19.8 years ago by ▴ 60
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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