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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer MLInterfaces bridge ensemblVEP AnnotationHub Cancer MLInterfaces bridge ensemblVEP
11.8 years ago Valerie Obenchain ★ 6.8k
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How to best include hyperparameter optimization in MLInterfaces?
MLInterfaces MLInterfaces
updated 12.5 years ago by 6.7k • written 12.5 years ago by ★ 13k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
12.9 years ago McGee, Monnie ▴ 300
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xvalSpec('NOTEST') problem
MLInterfaces MLInterfaces
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 440
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Need help with MLearn in MLInterfaces package
Clustering MLInterfaces Clustering MLInterfaces
updated 16.6 years ago by 6.7k • written 16.6 years ago by ▴ 10
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
17.7 years ago Vincent J. Carey, Jr. 6.7k
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stat.diag.daB MLInterfaces
Classification MLInterfaces Classification MLInterfaces
18.9 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Biobase MLInterfaces Biobase MLInterfaces
19.0 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Survival Biobase genefilter MLInterfaces Survival Biobase genefilter MLInterfaces
19.0 years ago Martin Morgan 25k
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xval in MLInterfaces package
MLInterfaces MLInterfaces
updated 19.3 years ago by 25k • written 19.3 years ago by ▴ 350
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MLInterfaces
GeneSpring MLInterfaces GeneSpring MLInterfaces
updated 19.6 years ago by ★ 1.0k • written 19.6 years ago by ▴ 60
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
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Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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