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mlinterfaces
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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
11.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.3k
views
How to best include hyperparameter optimization in MLInterfaces?
MLInterfaces
MLInterfaces
updated 12.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.8k
views
Classification in Mass Spectrometry Data
Microarray
Classification
Cancer
Ovarian
PROcess
MLInterfaces
ASSIGN
Microarray
Cancer
13.0 years ago
McGee, Monnie
▴ 300
0
votes
2
replies
1.6k
views
xvalSpec('NOTEST') problem
MLInterfaces
MLInterfaces
updated 13.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.5 years ago by
Gustavo Fernández Bayón
▴ 440
0
votes
1
reply
1.3k
views
Need help with MLearn in MLInterfaces package
Clustering
MLInterfaces
Clustering
MLInterfaces
updated 16.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.7 years ago by
Tul Gan
▴ 10
0
votes
0
replies
1.5k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH
SNP
Genetics
Annotation
GO
Visualization
affy
limma
aCGH
MLInterfaces
Category
SNP
17.8 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.0k
views
stat.diag.daB MLInterfaces
Classification
MLInterfaces
Classification
MLInterfaces
19.0 years ago
mpg33@drexel.edu
▴ 90
0
votes
0
replies
1.2k
views
Error in xval: No Direct or Inherited Method for this call
Biobase
MLInterfaces
Biobase
MLInterfaces
19.1 years ago
mpg33@drexel.edu
▴ 90
0
votes
0
replies
1.4k
views
Error in xval: No Direct or Inherited Method for this call
Survival
Biobase
genefilter
MLInterfaces
Survival
Biobase
genefilter
MLInterfaces
19.1 years ago
Martin Morgan
25k
0
votes
3
replies
1.5k
views
xval in MLInterfaces package
MLInterfaces
MLInterfaces
updated 19.4 years ago by
Martin Morgan
25k • written 19.4 years ago by
Wu, Xiwei
▴ 350
0
votes
1
reply
1.3k
views
MLInterfaces
GeneSpring
MLInterfaces
GeneSpring
MLInterfaces
updated 19.7 years ago by
Stephen Henderson
★ 1.0k • written 19.7 years ago by
Qi.Zhang@astrazeneca.com
▴ 60
11 results • Page
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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