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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer MLInterfaces bridge ensemblVEP AnnotationHub Cancer MLInterfaces bridge ensemblVEP
11.3 years ago Valerie Obenchain ★ 6.8k
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How to best include hyperparameter optimization in MLInterfaces?
MLInterfaces MLInterfaces
updated 12.0 years ago by 6.7k • written 12.0 years ago by ★ 13k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
12.5 years ago McGee, Monnie ▴ 300
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xvalSpec('NOTEST') problem
MLInterfaces MLInterfaces
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 440
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Need help with MLearn in MLInterfaces package
Clustering MLInterfaces Clustering MLInterfaces
updated 16.1 years ago by 6.7k • written 16.1 years ago by ▴ 10
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
17.2 years ago Vincent J. Carey, Jr. 6.7k
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stat.diag.daB MLInterfaces
Classification MLInterfaces Classification MLInterfaces
18.5 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Biobase MLInterfaces Biobase MLInterfaces
18.6 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Survival Biobase genefilter MLInterfaces Survival Biobase genefilter MLInterfaces
18.6 years ago Martin Morgan 25k
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xval in MLInterfaces package
MLInterfaces MLInterfaces
updated 18.8 years ago by 25k • written 18.8 years ago by ▴ 350
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MLInterfaces
GeneSpring MLInterfaces GeneSpring MLInterfaces
updated 19.2 years ago by ★ 1.0k • written 19.2 years ago by ▴ 60
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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
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Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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