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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer MLInterfaces bridge ensemblVEP AnnotationHub Cancer MLInterfaces bridge ensemblVEP
9.1 years ago Valerie Obenchain ★ 6.7k
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How to best include hyperparameter optimization in MLInterfaces?
MLInterfaces MLInterfaces
updated 9.8 years ago by 6.6k • written 9.8 years ago by ★ 12k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
10.2 years ago McGee, Monnie ▴ 300
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xvalSpec('NOTEST') problem
MLInterfaces MLInterfaces
updated 10.7 years ago by 6.6k • written 10.7 years ago by ▴ 440
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Need help with MLearn in MLInterfaces package
Clustering MLInterfaces Clustering MLInterfaces
updated 13.9 years ago by 6.6k • written 13.9 years ago by ▴ 10
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
15.0 years ago Vincent J. Carey, Jr. 6.6k
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stat.diag.daB MLInterfaces
Classification MLInterfaces Classification MLInterfaces
16.2 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Biobase MLInterfaces Biobase MLInterfaces
16.3 years ago mpg33@drexel.edu ▴ 90
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Error in xval: No Direct or Inherited Method for this call
Survival Biobase genefilter MLInterfaces Survival Biobase genefilter MLInterfaces
16.3 years ago Martin Morgan 25k
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xval in MLInterfaces package
MLInterfaces MLInterfaces
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 350
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MLInterfaces
GeneSpring MLInterfaces GeneSpring MLInterfaces
updated 16.9 years ago by ★ 1.0k • written 16.9 years ago by ▴ 60
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…
Answer: MA plot by Nathalie • 0
Thank you very much for your help and comments. There is errors in my file. BaseMean is BaseMeanLog2. I don't know how insert a file.
Comment: Design for DE analysis in tidybulk by Michael Love 39k
The mapping from what you want to a contrast is a long conversation. You can make pairwise comparisons or numeric contrasts or really anyth…
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Volcano Plot in R
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: MA plot
Answer: MA plot
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Teacher to Michael Love 39k
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