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motifStack
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reset
4
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1.4k
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motifStack Plotting the correct data positions on x axis
motifStack
R
3.9 years ago
Marwah
• 0
0
votes
7
replies
1.8k
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
6.5 years ago
saadmurtazakhan
▴ 10
1
vote
1
reply
1.2k
views
how can I convert a sequence to number
motifStack
updated 6.9 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
1.1k
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
7.9 years ago
aramp10
• 0
1
vote
2
replies
1.7k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 7.9 years ago by
Ou, Jianhong
★ 1.3k • written 7.9 years ago by
lmolla
▴ 10
2
votes
2
replies
1.3k
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 8.1 years ago by
Ou, Jianhong
★ 1.3k • written 8.1 years ago by
viyjy
• 0
0
votes
0
replies
1.3k
views
motifstack-GhostScript not working
motifstack
GhostScript
r
9.1 years ago
utra96
• 0
0
votes
10
replies
2.9k
views
motifStack crashes for example from documentation
motifstack
updated 10.0 years ago by
Ou, Jianhong
★ 1.3k • written 10.0 years ago by
map2085
▴ 40
0
votes
1
reply
1.7k
views
MotifStack not plotting?
motifStack
motifStack
12.2 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.3k
views
FW: About your motifStack package
motifStack
motifStack
12.3 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.1k
views
About your motifStack package
motifStack
motifStack
12.3 years ago
Ou, Jianhong
★ 1.3k
11 results • Page
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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
by
Gordon Smyth
53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa?
by
Gordon Smyth
53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
by
Korneel
• 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics
by
yesquokkan
• 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
colinmccornack
• 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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