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motifStack
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reset
4
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4
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828
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motifStack Plotting the correct data positions on x axis
motifStack
R
2.1 years ago
Marwah
• 0
0
votes
7
replies
1.2k
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
4.7 years ago
saadmurtazakhan
▴ 10
1
vote
1
reply
663
views
how can I convert a sequence to number
motifStack
updated 5.1 years ago by
Ou, Jianhong
★ 1.3k • written 5.1 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
684
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.1 years ago
aramp10
• 0
1
vote
2
replies
1.1k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.1 years ago by
Ou, Jianhong
★ 1.3k • written 6.1 years ago by
lmolla
▴ 10
2
votes
2
replies
851
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
viyjy
• 0
0
votes
0
replies
975
views
motifstack-GhostScript not working
motifstack
GhostScript
r
7.3 years ago
utra96
• 0
0
votes
10
replies
2.1k
views
motifStack crashes for example from documentation
motifstack
updated 8.2 years ago by
Ou, Jianhong
★ 1.3k • written 8.2 years ago by
map2085
▴ 40
0
votes
1
reply
1.4k
views
MotifStack not plotting?
motifStack
motifStack
10.4 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.1k
views
FW: About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
804
views
About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
11 results • Page
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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