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motifstack
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4
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825
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motifStack Plotting the correct data positions on x axis
motifStack
R
2.1 years ago
Marwah
• 0
0
votes
7
replies
1.2k
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
4.7 years ago
saadmurtazakhan
▴ 10
1
vote
1
reply
659
views
how can I convert a sequence to number
motifStack
updated 5.1 years ago by
Ou, Jianhong
★ 1.3k • written 5.1 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
680
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.1 years ago
aramp10
• 0
1
vote
2
replies
1.1k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.1 years ago by
Ou, Jianhong
★ 1.3k • written 6.1 years ago by
lmolla
▴ 10
2
votes
2
replies
847
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
viyjy
• 0
0
votes
0
replies
974
views
motifstack-GhostScript not working
motifstack
GhostScript
r
7.3 years ago
utra96
• 0
0
votes
10
replies
2.1k
views
motifStack crashes for example from documentation
motifstack
updated 8.2 years ago by
Ou, Jianhong
★ 1.3k • written 8.2 years ago by
map2085
▴ 40
0
votes
1
reply
1.4k
views
MotifStack not plotting?
motifStack
motifStack
10.4 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.1k
views
FW: About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
799
views
About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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