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motifstack
•
reset
4
votes
4
replies
396
views
motifStack Plotting the correct data positions on x axis
motifStack
R
10 months ago
Marwah
• 0
0
votes
7
replies
683
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
3.5 years ago
saadmurtazakhan
▴ 10
1
vote
1
reply
396
views
how can I convert a sequence to number
motifStack
updated 3.9 years ago by
Ou, Jianhong
★ 1.3k • written 3.9 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
480
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
4.9 years ago
aramp10
• 0
1
vote
2
replies
769
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 4.9 years ago by
Ou, Jianhong
★ 1.3k • written 4.9 years ago by
lmolla
▴ 10
2
votes
2
replies
568
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 5.1 years ago by
Ou, Jianhong
★ 1.3k • written 5.1 years ago by
viyjy
• 0
0
votes
0
replies
737
views
motifstack-GhostScript not working
motifstack
GhostScript
r
6.1 years ago
utra96
• 0
0
votes
10
replies
1.5k
views
motifStack crashes for example from documentation
motifstack
updated 7.0 years ago by
Ou, Jianhong
★ 1.3k • written 7.0 years ago by
map2085
▴ 40
0
votes
1
reply
1.1k
views
MotifStack not plotting?
motifStack
motifStack
9.1 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
833
views
FW: About your motifStack package
motifStack
motifStack
9.3 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
622
views
About your motifStack package
motifStack
motifStack
9.3 years ago
Ou, Jianhong
★ 1.3k
11 results • Page
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Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this? > library(pd.mir…
Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★ 2.1k
You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Votes
Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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Guido Hooiveld
★ 3.5k
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James W. MacDonald
62k
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Michael Love
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