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motifstack
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4
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845
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motifStack Plotting the correct data positions on x axis
motifStack
R
2.2 years ago • updated 2.1 years ago
Marwah
• 0
2
votes
2
replies
862
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
viyjy
• 0
1
vote
2
replies
1.1k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.2 years ago by
Ou, Jianhong
★ 1.3k • written 6.2 years ago by
lmolla
▴ 10
1
vote
1
reply
667
views
how can I convert a sequence to number
motifStack
updated 5.1 years ago by
Ou, Jianhong
★ 1.3k • written 5.1 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
984
views
motifstack-GhostScript not working
motifstack
GhostScript
r
7.3 years ago
utra96
• 0
0
votes
0
replies
806
views
About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
692
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.2 years ago
aramp10
• 0
0
votes
7
replies
1.2k
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
4.7 years ago
saadmurtazakhan
▴ 10
0
votes
1
reply
1.4k
views
MotifStack not plotting?
motifStack
motifStack
10.4 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.1k
views
FW: About your motifStack package
motifStack
motifStack
10.5 years ago
Ou, Jianhong
★ 1.3k
0
votes
10
replies
2.1k
views
motifStack crashes for example from documentation
motifstack
updated 8.2 years ago by
Ou, Jianhong
★ 1.3k • written 8.3 years ago by
map2085
▴ 40
11 results • Page
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Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
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