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motiv
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3
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1.7k
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Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem
motiv
chipseq
jaspar
updated 8.9 years ago by
emercier
• 0 • written 9.0 years ago by
w.jarassier
• 0
0
votes
4
replies
1.5k
views
occurrence of rGADEM motifs
rGADEM
MotIV
rGADEM
MotIV
updated 12.8 years ago by
Charles Joly Beauparlant
▴ 170 • written 12.8 years ago by
mattia pelizzola
▴ 200
1
vote
1
reply
1.2k
views
MotIV is not installed properly
MotIV
MotIV
updated 12.0 years ago by
Dan Tenenbaum
★ 8.2k • written 12.0 years ago by
Swaroopa Muppiri
▴ 20
0
votes
16
replies
3.7k
views
Motif search -- access to JASPAR, MotIV package, more TF-PWM relationships?
Arabidopsis thaliana
MotIV
Arabidopsis thaliana
MotIV
updated 12.0 years ago by
nooshin
▴ 300 • written 12.0 years ago by
Paul Shannon
▴ 750
0
votes
1
reply
2.3k
views
Motif search -- access to JASPAR, MotIV package, , more TF-PWM relationships?
Annotation
GO
MotIV
Annotation
GO
MotIV
updated 12.0 years ago by
Arno BioC
▴ 10 • written 12.0 years ago by
Vince Schulz
▴ 150
0
votes
1
reply
902
views
Conversion of a motiv class to a data.frame
motiv
updated 8.4 years ago by
Charles Joly Beauparlant
▴ 170 • written 8.4 years ago by
vedran.franke
• 0
0
votes
1
reply
1.7k
views
promoter prediction
Transcription
MotIV
MotifDb
Transcription
MotIV
MotifDb
updated 11.4 years ago by
Jing Huang
▴ 380 • written 11.4 years ago by
Paul Shannon
▴ 750
0
votes
0
replies
1.0k
views
How to use ALLR to calculate motifDistance
MotIV
MotIV
10.3 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.4k
views
ChIPpeakAnno
rGADEM
MotIV
MotifDb
rGADEM
MotIV
MotifDb
10.1 years ago
Bahar
▴ 10
0
votes
0
replies
1.0k
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
12.8 years ago
Chris Whelan
▴ 60
0
votes
0
replies
1.2k
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
12.8 years ago
Mercier Eloi
▴ 60
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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