Showing : multifactor • reset
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3
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EdgeR design matrix for mutlifactor RNA seq
edger design multifactor
updated 5.0 years ago by 68k • written 5.0 years ago by • 0
1
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4
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Help with Deseq2 design
deseq2 design multifactor
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
0
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6
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1.4k
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DESeq2- design matrix with multiple factors, taking gender into consideration
deseq2 multifactor interaction term gender effect 3-factors
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 50
2
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14
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How to account for population variation within regions in DESeq2?
multifactor nested design deseq2
9.1 years ago swaegers.janne • 0
2
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13
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How to account for population variation within regions in EdgeR?
edger multifactor nested design
9.2 years ago • updated 9.1 years ago swaegers.janne • 0
4
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12
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4.3k
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pairwise combining factors or multifactor analysis ? (DESeq2)
deseq2 multifactor pairwise
9.5 years ago • updated 9.4 years ago aziza ▴ 20
2
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5
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6.2k
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DESeq2 multifactor experiment design
deseq2 LRT multifactor contrast interactions
9.8 years ago • updated 9.7 years ago rclaire ▴ 20
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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction by picasa1983 • 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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