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interactions
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0
votes
2
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425
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DESeq2 interaction terms in 2x2x2 factorial design
Interactions
design
Multifactorial
DESeq2
updated 9 months ago by
swbarnes2
★ 1.1k • written 9 months ago by
Marie
• 0
0
votes
1
reply
199
views
Account for parent cell line when comparing isogenic mutants
interactions
design
DESeq2
updated 9 months ago by
Michael Love
37k • written 9 months ago by
oliver.ziff
• 0
0
votes
2
replies
292
views
results() function and finding the difference of differences
interactions
DESeq2
9 months ago
Nayrouz
• 0
0
votes
3
replies
316
views
Analysis of interactions in RNAseq data: LRT vs 2 way ANOVA
DESeq2
LRT
two-way-ANOVA
interactions
updated 11 months ago by
Michael Love
37k • written 11 months ago by
Enzo.Scifo
• 0
1
vote
2
replies
690
views
How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions
3factors
limma
Microarray
18 months ago
Dan
▴ 10
2
votes
3
replies
468
views
DeSEQ2 factor effect without interaction effect
DESeq2
Interactions
19 months ago • updated 18 months ago
cossardg
▴ 10
2
votes
3
replies
2.1k
views
DESeq2: Multiple Comparisons with Different Conditions and Replicates
Interactions
DESeq2
Design
updated 19 months ago by
Kevin Blighe
3.6k • written 19 months ago by
vanbelj
▴ 10
6
votes
8
replies
1.3k
views
Interaction with DESeq2 via DiffBind
diffbind
deseq2
interactions
updated 19 months ago by
pierre.marin
• 0 • written 4.8 years ago by
rbronste
▴ 60
3
votes
3
replies
563
views
Problem to understand Interactions at any time
RNA-seq
edgeR
interactions
updated 22 months ago by
Gordon Smyth
46k • written 22 months ago by
vm.higareda
▴ 10
1
vote
5
replies
437
views
Testing Interactions without an interaction term in the design formula
deseq2
interactions
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
colaneri
▴ 30
0
votes
4
replies
1.0k
views
DESeq2 lfcShrink with interactions
deseq2
lfcShrink
interactions
updated 3.5 years ago by
Michael Love
37k • written 3.5 years ago by
hannepainter
• 0
0
votes
5
replies
670
views
Splitting a dataset and control sample batch
deseq2
interactions
batch effect correction
grouping variable
updated 3.9 years ago by
Michael Love
37k • written 3.9 years ago by
mat.lesche
▴ 80
0
votes
5
replies
711
views
RNA-seq time course experiment - DESEq2 Contrasts
deseq2
rna-seq
interactions
contrast
updated 3.9 years ago by
Michael Love
37k • written 3.9 years ago by
Maithê Barros
▴ 10
0
votes
3
replies
672
views
DESeq2 multifactor design, interpreting interaction names
deseq2
interactions
multifactorial design
updated 4.0 years ago by
Michael Love
37k • written 4.0 years ago by
fargo
• 0
0
votes
2
replies
520
views
Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq
edgeR
makecontrasts
interactions
updated 4.1 years ago by
Aaron Lun
★ 27k • written 4.1 years ago by
David Rengel
▴ 70
0
votes
1
reply
548
views
Interactions and contrasts for DE analysis in ballgown
ballgown
R
RNAseq
DE
interactions
updated 4.2 years ago by
James W. MacDonald
60k • written 4.2 years ago by
khill33
• 0
1
vote
5
replies
700
views
Trying to simplify Interaction analysis with edger, and propably failing to do so?
rnaseq
edger
interactions
multiple factor design
differential gene expression
4.4 years ago
David Rengel
▴ 70
0
votes
1
reply
802
views
Using Effect Coding or Orthogonal Coding instead of dummy coding in DESeq2?
deseq2
multiple factor design
interactions
orthogonal coding
effect coding
updated 4.7 years ago by
Peter Langfelder
★ 2.7k • written 4.7 years ago by
vlaufer
• 0
0
votes
2
replies
1.0k
views
stimulation effects between wild-type and knockout cells using deseq
multiple factor design
interactions
design matrix
deseq2
updated 4.8 years ago by
Michael Love
37k • written 6.7 years ago by
Assa Yeroslaviz
★ 1.5k
8
votes
3
replies
1.7k
views
Testing three-way interactions in DESeq2
deseq2
rna-seq
rnaseq
interactions
updated 4.8 years ago by
Michael Love
37k • written 4.8 years ago by
red_bricks
▴ 50
5
votes
4
replies
812
views
Differential expression analysis desgin
differential expression
deseq2
edger
interactions
limma
updated 4.9 years ago by
Gordon Smyth
46k • written 4.9 years ago by
kendralec
▴ 10
0
votes
2
replies
1.2k
views
DESEq2 contrast statement syntax and design statement question
deseq2
interactions
contrast
updated 5.0 years ago by
Michael Love
37k • written 5.0 years ago by
grashow
▴ 10
3
votes
7
replies
2.1k
views
DESeq2 lfcShrink with interactions
deseq2
interactions
logfoldchange
updated 5.0 years ago by
Michael Love
37k • written 5.0 years ago by
rrcutler
▴ 70
4
votes
1
reply
2.0k
views
Limma: Contrasts with interaction term
limma
interactions
continuous term
multiple factor design
updated 5.4 years ago by
Aaron Lun
★ 27k • written 5.4 years ago by
huma
▴ 10
6
votes
3
replies
1.8k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
5.9 years ago
lanhuong
▴ 20
3
votes
5
replies
3.5k
views
DESeq2 3-fatcor design and different interaction terms
deseq2
bioconductor
rnaseq
multifactorial design
interactions
updated 6.0 years ago by
Michael Love
37k • written 6.0 years ago by
c.evang
▴ 10
2
votes
6
replies
1.3k
views
Seeking confirmation on manually setting contrasts for a 3-factor design in DESeq2 with multiple interaction terms
deseq2
multiple factor design
interactions
design and contrast matrix
contrast
updated 6.3 years ago by
Michael Love
37k • written 6.3 years ago by
piensaglobalmente
▴ 10
2
votes
4
replies
4.1k
views
Interaction terms in DESeq2 contrasts
deseq2
interactions
design and contrast matrix
contrast
6.4 years ago
dwzhang.wisc
▴ 20
3
votes
7
replies
3.1k
views
edgeR glmLRT and interaction effect: an example
rna-seq
edger
glmlrt
interactions
updated 6.4 years ago by
Gordon Smyth
46k • written 6.4 years ago by
David Rengel
▴ 70
2
votes
5
replies
1.3k
views
How to make sense of the fold change values in the interaction results object.
deseq2
logfoldchange
interactions
updated 6.4 years ago by
Michael Love
37k • written 6.4 years ago by
colaneri
▴ 30
2
votes
5
replies
4.3k
views
DESeq2 multifactor experiment design
deseq2
LRT
multifactor
contrast
interactions
6.6 years ago • updated 6.5 years ago
rclaire
▴ 20
13
votes
6
replies
5.7k
views
DESeq2 multiple interaction terms 3-factor design
deseq2
deseq
interactions
multiple factor design
updated 6.6 years ago by
Michael Love
37k • written 6.6 years ago by
Stephen Turner
▴ 290
1
vote
5
replies
2.4k
views
Contrast All Interaction Effects in DESeq2 in current version (1.10.1)
DESeq2
differential gene expression
interactions
6.8 years ago
marcus.stoiber
• 0
0
votes
2
replies
802
views
R package for molecule interactions?
r
package
function
interactions
6.8 years ago
amyfm
▴ 10
5
votes
3
replies
4.4k
views
Calculating contrasts for continuous variable anad interaction effect in Limma
limma design matrix
design and contrast matrix
continuous
interactions
updated 6.8 years ago by
Aaron Lun
★ 27k • written 6.8 years ago by
jaison75
▴ 20
0
votes
1
reply
1.3k
views
DESeq2 design issues - specifically understanding contrasts & interactions from page 23-25 of the DESeq2 manual
deseq2
design and contrast matrix
interactions
contrast
updated 6.9 years ago by
Michael Love
37k • written 6.9 years ago by
moldach
▴ 20
2
votes
8
replies
2.6k
views
confusing on the interaction and betaprior in DESeq2.
deseq2
interactions
contrast
7.2 years ago
shao
▴ 100
0
votes
1
reply
1.0k
views
Interaction of fixed effects in DESeq2
deseq2
interactions
updated 7.2 years ago by
Michael Love
37k • written 7.2 years ago by
Silva
• 0
3
votes
4
replies
2.3k
views
RNAseq analysis using edgeR - specifying and testing full factorial 2x2x4 model, main effects and interactions.
edger
multiple factor design
interactions
updated 7.3 years ago by
Aaron Lun
★ 27k • written 7.3 years ago by
v.oostra
• 0
1
vote
0
replies
1.6k
views
Job:
Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening
interactions
genetics
jobs
image analysis
Job
7.3 years ago
Bernd Fischer
▴ 550
5
votes
11
replies
9.3k
views
DESeq2: with multiple factors and interaction terms won't show all effects
deseq2
multiple factor design
contrast
interactions
updated 7.5 years ago by
Michael Love
37k • written 7.5 years ago by
mat.lesche
▴ 80
0
votes
3
replies
1.6k
views
DESeq2: interaction controlling for genetic effects
deseq
interactions
updated 7.7 years ago by
Michael Love
37k • written 7.7 years ago by
rachelwright8
▴ 10
1
vote
7
replies
2.1k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny
network
interactions
7.8 years ago
pshannon
▴ 90
43 results • Page
1 of 1
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Analysis of peaks generated from Homer using Diffbind
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