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multifactor
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How to account for population variation within regions in DESeq2?
multifactor
nested design
deseq2
7.6 years ago
swaegers.janne
• 0
2
votes
13
replies
1.5k
views
How to account for population variation within regions in EdgeR?
edger
multifactor
nested design
7.7 years ago • updated 7.6 years ago
swaegers.janne
• 0
4
votes
12
replies
3.2k
views
pairwise combining factors or multifactor analysis ? (DESeq2)
deseq2
multifactor
pairwise
8.0 years ago • updated 7.9 years ago
aziza
▴ 20
0
votes
6
replies
943
views
DESeq2- design matrix with multiple factors, taking gender into consideration
deseq2
multifactor
interaction term
gender effect
3-factors
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
kmu004
▴ 50
2
votes
5
replies
5.5k
views
DESeq2 multifactor experiment design
deseq2
LRT
multifactor
contrast
interactions
8.3 years ago • updated 8.2 years ago
rclaire
▴ 20
1
vote
4
replies
812
views
Help with Deseq2 design
deseq2
design
multifactor
updated 4.3 years ago by
Michael Love
41k • written 4.3 years ago by
sxp585
• 0
2
votes
3
replies
830
views
EdgeR design matrix for mutlifactor RNA seq
edger
design
multifactor
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
jackiesalzbank
• 0
7 results • Page
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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