Bioconductor Multifactorial

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DESeq2 multifactorial nested

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by jd • 0

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by Laia ▴ 10

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by arshad1292 • 0

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Interactions design Multifactorial DESeq2

updated 3.4 years ago by swbarnes2 ★ 1.4k • written 3.4 years ago by Marie • 0

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Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k

In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.

Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Answer: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

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Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

Having Trouble Using CNE12() and CNE21() in CNEr

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Popular Question to Ariel Chernomoretz ▴ 170