Bioconductor Multifactorial

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DESeq2 multifactorial nested

updated 21 months ago by Basti ▴ 780 • written 21 months ago by jd • 0

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.0 years ago by James W. MacDonald 67k • written 2.0 years ago by Laia ▴ 10

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 2.0 years ago by Michael Love 43k • written 2.1 years ago by arshad1292 • 0

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Interactions design Multifactorial DESeq2

updated 3.1 years ago by swbarnes2 ★ 1.4k • written 3.1 years ago by Marie • 0

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Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Comment: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k

Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …

Comment: Help using rtracklayer for gene ID extraction by Aichatou • 0

Hello, Please disregard the previous post. it's working now, i think. I am able to create the txdb object but I can't see all the other inf…

Comment: p value is 0, padj is 0 by Wirayatida • 0

Than you so much. My counts are 47,37 and 72 for mock. The treatment is 8153, 6723 and 8024.

Comment: p value is 0, padj is 0 by Wirayatida • 0

Thank you so much for your information. I understand it.

Votes

Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

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