Bioconductor Time-series

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 6 weeks ago by ATpoint ★ 3.4k • written 6 weeks ago by Debebe • 0

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414

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 10 months ago by Michael Love 40k • written 11 months ago by arshad1292 • 0

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559

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time-series mfuzz replace=FALSE

16 months ago soda ▴ 80

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659

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half-life DESeq2 time-series

updated 2.5 years ago by Michael Love 40k • written 2.5 years ago by Xianjun Dong ▴ 10

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1.5k

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deseq2 cancer rna-seq time-series

4.2 years ago mah19 • 0

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2.4k

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deseq2 time-series design matrix edger

updated 4.6 years ago by Michael Love 40k • written 4.6 years ago by Assa Yeroslaviz ★ 1.5k

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866

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deseq2 time-series without replicate

updated 5.2 years ago by Michael Love 40k • written 5.2 years ago by bahlv • 0

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1.1k

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deseq2 timecourse multiple time points time-series

updated 5.2 years ago by Michael Love 40k • written 5.2 years ago by zhangfei-123 • 0

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1.3k

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DESeq2 time-series

updated 6.0 years ago by Michael Love 40k • written 6.0 years ago by gtechbio ▴ 10

9 results • Page 1 of 1

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Answer: how to extract specific gene coordinates by passing a list of genes using homo by James W. MacDonald 63k

``` > subset(transcripts(Homo.sapiens, columns = "SYMBOL"), SYMBOL == "BRCA2") 'select()' returned 1:1 mapping between keys and columns …

Answer: tximport error: vroom by Michael Love 40k

Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).

Comment: tximport error: vroom by Kevin Blighe 3.8k

Cross-posted: https://www.biostars.org/p/9576578/

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

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Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

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