Bioconductor Multiple factor levels

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deseq2 design model rnaseq multiple factor levels

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by tasnif.rahman • 0

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Comment: Bioconductor 3.18 is Released! by thelmatertl • 0

This is a release that expresses gratitude to the developers and community members for their contributions and the new features enhance the…

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0

Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

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Answer: Handling biological replicates in DESeq2

A: Does edgeR need to specify reference group?

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