Bioconductor Multiple groups

Showing : multiple groups • reset

votes

replies

2.0k

views

timecourse multiple groups edgeR

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by BharathAnanth ▴ 80

votes

replies

1.5k

views

deseq2 multiple groups

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by amir_b_e • 0

vote

replies

1.3k

views

deseq2 interaction term multiple groups betaprior

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by tarun2 • 0

votes

replies

2.4k

views

multiple groups differential gene expression microarray

7.5 years ago A ▴ 60

votes

1.1k

views

deseq2 multiple groups

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by blobbyscience • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Charles • 0

I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Votes

Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Awards • All