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multiple groups
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0
votes
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replies
2.4k
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Differential expression between multiple groups
multiple groups
differential gene expression
microarray
7.5 years ago
A
▴ 60
0
votes
8
replies
2.0k
views
edgeR: multi-subject time series analysis
timecourse
multiple groups
edgeR
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
BharathAnanth
▴ 80
0
votes
3
replies
1.5k
views
Group comparison using DESeq
deseq2
multiple groups
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
amir_b_e
• 0
1
vote
3
replies
1.3k
views
DESEq2: the use of interaction term and grouping with different betaPrior arguments in older version of DESEq2
deseq2
interaction term
multiple groups
betaprior
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
tarun2
• 0
0
votes
1
reply
1.1k
views
Changing group labels yields different results in DESeq2
deseq2
multiple groups
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
blobbyscience
• 0
5 results • Page
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Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
Sorry for the delay, here it is my code which displays the warning message: Normalization: countsdge <- DGEList(counts, timepoint, ge…
Answer: blockwiseModule crashes in the end and doesn't generate modules
by
phylliskeller162
• 0
Crave adrenaline, music, and pixel-perfect jumps? [Geometry Dash][1] delivers it all in one pulse-pounding ride! [1]: https://geomet…
Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm
by
Charles
• 0
I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
by
James W. MacDonald
68k
Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.
Comment: Heatmap of a transformed deseq object with pheatmap
by
James W. MacDonald
68k
The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…
Votes
A: conceptual question about FDR, FDR adjusted p-value and q-value
A: conceptual question about FDR, FDR adjusted p-value and q-value
conceptual question about FDR, FDR adjusted p-value and q-value
edgeR multiple contrasts Vs. One test
A: edgeR multiple contrasts Vs. One test
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