Bioconductor Mus musculus

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ppi stringdb mus musculus

updated 7.6 years ago by damian.szk ▴ 110 • written 7.6 years ago by hkarakurt ▴ 20

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biomart TF biotype ensembl mus musculus

updated 7.7 years ago by Mike Smith ★ 6.6k • written 7.8 years ago by rbronste ▴ 60

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Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb

updated 11.3 years ago by Sonali Arora ▴ 390 • written 11.3 years ago by Guest User ★ 13k

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Mus musculus BSgenome BSgenome Mus musculus BSgenome BSgenome

updated 12.0 years ago by Hervé Pagès 16k • written 12.0 years ago by Diego Diez ▴ 760

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GO Mus musculus BSgenome BSgenome lumi GO Mus musculus BSgenome BSgenome lumi

updated 12.3 years ago by Pan Du ▴ 440 • written 12.3 years ago by Guest User ★ 13k

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RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO

12.6 years ago Matthew Thornton ▴ 380

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3.8k

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Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno

12.6 years ago Julie Zhu ★ 4.3k

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Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO

15.7 years ago Dick Beyer ★ 1.4k

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GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO

updated 15.7 years ago by Sean Davis 21k • written 15.7 years ago by Dick Beyer ★ 1.4k

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Annotation Mus musculus probe affy Annotation Mus musculus probe affy

15.9 years ago Robert Castelo ★ 3.4k

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Mus musculus biomaRt GenomeGraphs Mus musculus biomaRt GenomeGraphs

updated 16.4 years ago by steffen@stat.Berkeley.EDU ▴ 600 • written 16.4 years ago by Mark Robinson ★ 1.1k

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BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate

17.3 years ago Lynn Amon ▴ 280

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Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder

updated 20.4 years ago by John Zhang ★ 2.9k • written 20.4 years ago by Christopher Wilkinson ▴ 140

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Microarray Mus musculus limma Microarray Mus musculus limma

updated 20.5 years ago by Gordon Smyth 53k • written 20.5 years ago by Humberto Ortiz Zuazaga ▴ 10

14 results • Page 1 of 1

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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