Showing : mus musculus • reset
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How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 6.6 years ago by ▴ 110 • written 6.6 years ago by ▴ 20
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biomaRT biotype TFs only
biomart TF biotype ensembl mus musculus
updated 6.8 years ago by ★ 6.6k • written 6.8 years ago by ▴ 60
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GenomeinfoDB
Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb
updated 10.4 years ago by ▴ 390 • written 10.4 years ago by ★ 13k
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BSgenome.Mmusculus.UCSC.mm10 and upstream sequences.
Mus musculus BSgenome BSgenome Mus musculus BSgenome BSgenome
updated 11.1 years ago by 16k • written 11.1 years ago by ▴ 760
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lumiR returns ExpressionSet object instead of LumiBatch
GO Mus musculus BSgenome BSgenome lumi GO Mus musculus BSgenome BSgenome lumi
updated 11.4 years ago by ▴ 440 • written 11.4 years ago by ★ 13k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
11.7 years ago Matthew Thornton ▴ 380
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
14.7 years ago Dick Beyer ★ 1.4k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 14.7 years ago by 21k • written 14.7 years ago by ★ 1.4k
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control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation Mus musculus probe affy Annotation Mus musculus probe affy
15.0 years ago Robert Castelo ★ 3.4k
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GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus biomaRt GenomeGraphs Mus musculus biomaRt GenomeGraphs
updated 15.5 years ago by ▴ 600 • written 15.5 years ago by ★ 1.1k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
16.4 years ago Lynn Amon ▴ 280
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organism = mouse or Mus Musculus in AnnBuilder
Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder
updated 19.5 years ago by ★ 2.9k • written 19.5 years ago by ▴ 140
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decideTests and topTable
Microarray Mus musculus limma Microarray Mus musculus limma
updated 19.6 years ago by 51k • written 19.6 years ago by ▴ 10
14 results • Page 1 of 1
Recent ...
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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