Bioconductor Mus musculus

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ppi stringdb mus musculus

updated 6.6 years ago by damian.szk ▴ 110 • written 6.6 years ago by hkarakurt ▴ 20

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biomart TF biotype ensembl mus musculus

updated 6.8 years ago by Mike Smith ★ 6.6k • written 6.8 years ago by rbronste ▴ 60

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Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb

updated 10.4 years ago by Sonali Arora ▴ 390 • written 10.4 years ago by Guest User ★ 13k

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Mus musculus BSgenome BSgenome Mus musculus BSgenome BSgenome

updated 11.0 years ago by Hervé Pagès 16k • written 11.0 years ago by Diego Diez ▴ 760

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1.5k

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GO Mus musculus BSgenome BSgenome lumi GO Mus musculus BSgenome BSgenome lumi

updated 11.4 years ago by Pan Du ▴ 440 • written 11.4 years ago by Guest User ★ 13k

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RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO

11.7 years ago Matthew Thornton ▴ 380

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3.5k

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Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno

11.7 years ago Julie Zhu ★ 4.3k

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Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO

14.7 years ago Dick Beyer ★ 1.4k

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1.4k

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GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO

updated 14.7 years ago by Sean Davis 21k • written 14.7 years ago by Dick Beyer ★ 1.4k

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Annotation Mus musculus probe affy Annotation Mus musculus probe affy

14.9 years ago Robert Castelo ★ 3.4k

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Mus musculus biomaRt GenomeGraphs Mus musculus biomaRt GenomeGraphs

updated 15.4 years ago by steffen@stat.Berkeley.EDU ▴ 600 • written 15.4 years ago by Mark Robinson ★ 1.1k

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1.3k

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BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate

16.3 years ago Lynn Amon ▴ 280

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1.3k

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Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder

updated 19.4 years ago by John Zhang ★ 2.9k • written 19.4 years ago by Christopher Wilkinson ▴ 140

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Microarray Mus musculus limma Microarray Mus musculus limma

updated 19.6 years ago by Gordon Smyth 51k • written 19.6 years ago by Humberto Ortiz Zuazaga ▴ 10

14 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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