Bioconductor Mus musculus

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ppi stringdb mus musculus

updated 7.7 years ago by damian.szk ▴ 110 • written 7.7 years ago by hkarakurt ▴ 20

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biomart TF biotype ensembl mus musculus

updated 7.9 years ago by Mike Smith ★ 6.6k • written 7.9 years ago by rbronste ▴ 60

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Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb

updated 11.4 years ago by Sonali Arora ▴ 390 • written 11.4 years ago by Guest User ★ 13k

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Mus musculus BSgenome BSgenome Mus musculus BSgenome BSgenome

updated 12.1 years ago by Hervé Pagès 16k • written 12.1 years ago by Diego Diez ▴ 760

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GO Mus musculus BSgenome BSgenome lumi GO Mus musculus BSgenome BSgenome lumi

updated 12.5 years ago by Pan Du ▴ 440 • written 12.5 years ago by Guest User ★ 13k

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RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO

12.8 years ago Matthew Thornton ▴ 390

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3.8k

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Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno

12.8 years ago Julie Zhu ★ 4.3k

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Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO

15.8 years ago Dick Beyer ★ 1.4k

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GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO

updated 15.8 years ago by Sean Davis 21k • written 15.8 years ago by Dick Beyer ★ 1.4k

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Annotation Mus musculus probe affy Annotation Mus musculus probe affy

16.0 years ago Robert Castelo ★ 3.4k

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Mus musculus biomaRt GenomeGraphs Mus musculus biomaRt GenomeGraphs

updated 16.5 years ago by steffen@stat.Berkeley.EDU ▴ 600 • written 16.5 years ago by Mark Robinson ★ 1.1k

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BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate

17.4 years ago Lynn Amon ▴ 280

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Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder

updated 20.5 years ago by John Zhang ★ 2.9k • written 20.5 years ago by Christopher Wilkinson ▴ 140

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Microarray Mus musculus limma Microarray Mus musculus limma

updated 20.6 years ago by Gordon Smyth 53k • written 20.7 years ago by Humberto Ortiz Zuazaga ▴ 10

14 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k