2 days ago
robynne.braun
•
0
0
votes
1
reply
32
views
0
votes
7
replies
453
views
updated 6 weeks ago by
damian.szk
▴
80
•
written 6 weeks ago by
Furkan
•
0
0
votes
0
replies
148
views
2
votes
2
replies
431
views
6 months ago
Charlotte Soneson
▴
170
2
votes
3
replies
658
views
16 months ago
AstrobioMike
•
0
1
vote
2
replies
654
views
2
votes
4
replies
1.3k
views
0
votes
6
replies
1.5k
views
20 months ago • updated 19 months ago
Wolfgang RAFFELSBERGER
▴
140
2
votes
9
replies
1.6k
views
updated 21 months ago by
damian.szk
▴
80
•
written 22 months ago by
jarod
▴
20
3
votes
4
replies
1.6k
views
updated 20 months ago by
damian.szk
▴
80
•
written 23 months ago by
qardessio
▴
10
0
votes
3
replies
925
views
updated 2.1 years ago by
damian.szk
▴
80
•
written 2.1 years ago by
Wolfgang RAFFELSBERGER
▴
140
0
votes
1
reply
570
views
updated 2.1 years ago by
damian.szk
▴
80
•
written 2.1 years ago by
Ashish Jain
▴
10
0
votes
0
replies
625
views
0
votes
1
reply
1.3k
views
updated 2.3 years ago by
Kevin Blighe
3.8k
•
written 2.3 years ago by
Saransh
•
0
1
vote
1
reply
728
views
0
votes
1
reply
615
views
updated 2.8 years ago by
Vincent J. Carey, Jr.
6.7k
•
written 2.9 years ago by
Evan-GIBH
•
0
0
votes
15
replies
2.0k
views
updated 4.3 years ago by
zhanghongjie000
•
0
•
written 4.5 years ago by
shahroze786
•
0
2
votes
4
replies
1.3k
views
0
votes
2
replies
1.0k
views
4.5 years ago
Samuel Lee
•
0
0
votes
1
reply
820
views
0
votes
1
reply
688
views
0
votes
1
reply
764
views
updated 5.5 years ago by
damian.szk
▴
80
•
written 5.5 years ago by
hkarakurt
▴
20
0
votes
4
replies
1.1k
views
5.7 years ago
cristinapasi
•
0
0
votes
0
replies
883
views
0
votes
3
replies
2.1k
views
updated 6.4 years ago by
Gregor Rot
▴
10
•
written 6.4 years ago by
mwinerip
•
0
1
vote
2
replies
1.1k
views
6.8 years ago • updated 6.7 years ago
florian.reisinger
•
0
0
votes
1
reply
1.2k
views
1
vote
2
replies
1.6k
views
Recent ...
Replies
Comment: Suggested package missing from Development version of Bioconductor
by
shepherl
3.5k
Have you tried reaching out to the maintainers? If they do not fix the package it will remain unavailable and cause ERROR in your package.…
Answer: Batch effect adjust in model matrix
by
ATpoint
★
3.4k
Each sample is a different day, that is called "nested", so there is nothing you can do here. Next time do a better experimental design, he…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Michael Love
40k
Oh, I see.
If you can't use counts + offset then I prefer lengthScaledTPM to DESeq2, i.e. `txi$counts` to `DESeqDataSetFromMatrix()`.
So …
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Christian
•
0
I´m sorry causing confusion here, but the gene matrices I refer to are actually obtained via https://nf-co.re/rnaseq.
The problem with the…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Michael Love
40k
For the reasons outlined in the Soneson paper, I'd prefer this pipeline:
https://nf-co.re/rnaseq
You cannot use these scaled TPM approach…
Votes
Awards
• All
Popular Question to
Gordon Smyth
48k
Popular Question to
nhaus
•
0
Popular Question to
Bogdan
▴
660
Popular Question to
Michael Love
40k
Locations
• All
United States, 14 minutes ago
WEHI, Melbourne, Australia, 25 minutes ago
St Petersburg, 28 minutes ago
European Union, 34 minutes ago
United States, 1 hour ago
United States, 14 minutes ago
WEHI, Melbourne, Australia, 25 minutes ago
St Petersburg, 28 minutes ago
European Union, 34 minutes ago
United States, 1 hour ago
Traffic: 377 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6