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mygene
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fonction queryMany not found
mygene
querymany
7.0 years ago
dahmani_amel
• 0
1
vote
4
replies
679
views
Genomics data
mygene
offtopic
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
Shila
• 0
0
votes
2
replies
1.6k
views
Cannot install package mygene on Bioconductor 3.3, R 3.3.0
mygene
bioconductor
openssl
httr
7.9 years ago
carlos.chau.hk
• 0
1
vote
1
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1.2k
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Returning gene functional annotations with gene symbols as input (using mygene Bioconductor package)
software error
mygene
gene ontology
R
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
Bohdan Khomtchouk
▴ 10
0
votes
1
reply
858
views
Using queryMany() in mygene package: Problem of querying Entrez gene IDs based on UniGene IDs in rat.
mygene
queryMany
updated 22 months ago by
Guido Hooiveld
★ 3.9k • written 22 months ago by
chaof
• 0
5 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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