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nanoporernaseq
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4
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2.0k
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How to normalize long-read RNA-seq data for comparison with short-reads
NanoporeRNASeq
LongRead
Normalization
ShortRead
IlluminaRNASeq
15 months ago
Bernardo
▴ 10
1
vote
2
replies
1.2k
views
running DESeq2 from nanopore wf-alignment workflow
DESeq2
NanoporeRNASeq
updated 17 months ago by
Michael Love
42k • written 17 months ago by
shahla.kangachar
• 0
1
vote
1
reply
1.5k
views
read nanopore Fastq file
NanoporeRNASeq
RNASeq
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
sinanoori88
• 0
0
votes
1
reply
639
views
Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression
NanoporeRNASeq
DESeq2
GeneExpression
DEVis
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
Ana
• 0
0
votes
0
replies
748
views
Job:
Postdoctoral position in Computational Biology - RNA dynamics through Nanopore - Milan (Italy)
NanoporeRNASeq
RNAdynamics
RNAmodifications
3.0 years ago
mattia pelizzola
▴ 200
5 results • Page
1 of 1
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Replies
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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