Biostar Ncbi geo

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NCBI GEO

updated 18 months ago by SAn • 0 • written 6.3 years ago by maedakus ▴ 10

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geoquery ncbi geo biobase

3.5 years ago cschot3 • 0

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555

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limma differential gene expression ncbi geo affymetrix microarrays

updated 3.6 years ago by Aaron Lun ★ 27k • written 3.6 years ago by Francesca McGrath • 0

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frma barcode geneexpression gsm ncbi geo

updated 4.5 years ago by Matthew McCall ▴ 830 • written 4.5 years ago by diana.elassal • 0

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limma microarray bioconductor ncbi geo

updated 5.4 years ago by Gordon Smyth 45k • written 5.4 years ago by kevin.m.hao ▴ 10

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geoquery ncbi geo geo data

5.5 years ago fongchunchan ▴ 30

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Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

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Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Scholar to Nicole • 0

Teacher to Michael Love 37k