Bioconductor Newpackage

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newpackage rtracklayer

updated 22 months ago by shepherl 4.2k • written 22 months ago by Lucille • 0

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newpackage ChAMP

updated 3.2 years ago by Yi Ping • 0 • written 4.1 years ago by Brendon • 0

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newpackage Deadline Release Submission

4.3 years ago shepherl 4.2k

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release Submission newpackage Release Deadline

4.7 years ago shepherl 4.2k

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CONSTANd newpackage

updated 4.6 years ago by guido.barzaghi • 0 • written 4.8 years ago by joris.vanhoutven ▴ 10

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newpackage vignette installation

updated 6.2 years ago by shepherl 4.2k • written 6.2 years ago by Krutik Patel ▴ 10

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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