Bioconductor Newpackage

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newpackage rtracklayer

updated 18 months ago by shepherl 4.2k • written 18 months ago by Lucille • 0

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newpackage ChAMP

updated 3.0 years ago by Yi Ping • 0 • written 3.8 years ago by Brendon • 0

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newpackage Deadline Release Submission

4.0 years ago shepherl 4.2k

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release Submission newpackage Release Deadline

4.4 years ago shepherl 4.2k

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CONSTANd newpackage

updated 4.3 years ago by guido.barzaghi • 0 • written 4.5 years ago by joris.vanhoutven ▴ 10

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newpackage vignette installation

updated 5.9 years ago by shepherl 4.2k • written 5.9 years ago by Krutik Patel ▴ 10

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Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k