Bioconductor Nondetects

Showing : nondetects • reset

votes

replies

2.1k

views

qPCRset object nondetects r package txt

updated 6 months ago by Nat.Nataren • 0 • written 6.3 years ago by s.m.may • 0

vote

replies

1.8k

views

nondetects software error

updated 6.2 years ago by corocla • 0 • written 6.3 years ago by Ryan C. Thompson ★ 7.9k

votes

1.3k

views

nondetects R PCR

updated 6.7 years ago by Matthew McCall ▴ 830 • written 6.7 years ago by garciaii_antuerpia • 0

votes

852

views

nondetects qpcrImpute

updated 4.9 years ago by Matthew McCall ▴ 830 • written 5.2 years ago by D.J.Coulson2 • 0

vote

replies

593

views

bug nondetects HTqPCR

updated 6 months ago by Nat.Nataren • 0 • written 7 months ago by Ed Siefker ▴ 230

votes

replies

500

views

nondetects qPCR qPCRData

3.0 years ago jhackett ▴ 30

votes

replies

251

views

qPCR nondetects

5 months ago Ed Siefker ▴ 230

7 results • Page 1 of 1

Recent ...

Replies

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

Awards • All