Showing : HTqPCR • reset
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How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
7 months ago Javier • 0
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298
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Made a pDATA manually for HTqPCR procedure
HTqPCR phenoData esetVis pData
19 months ago Marcelo Laia ▴ 450
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317
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Error when reading qPCR data in SDS format
HTqPCR
2.2 years ago Nghia • 0
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1.1k
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HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 2.3 years ago by 47k • written 7.5 years ago by ▴ 40
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4
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2.0k
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Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 19 months ago by ▴ 360 • written 2.3 years ago by ▴ 660
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Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
2.9 years ago Maximilian Fuchs • 0
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271
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HTqPCR package, filterCategory function
HTqPCR filterCategory setCategory
updated 3.4 years ago by 63k • written 3.4 years ago by • 0
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478
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Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
3.8 years ago mohammedtoufiq91 ▴ 10
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406
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Analyze ct data using HTqPCR
HTqPCR R NormqPCR
3.9 years ago annesha • 0
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314
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Error with HTqPCR rbind
HTqPCR
4.0 years ago NAIARA GARCÍA ▴ 10
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1
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618
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HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma htqpcr
updated 2.4 years ago by • 0 • written 4.4 years ago by • 0
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456
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A problem about changeCtLayout in HTqPCR
htqpcr
4.4 years ago tropicalis • 0
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3
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679
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Creation of qPCRset in R for HtqPCR
R bioconductor htqpcr qpcrset object
4.6 years ago mohammedtoufiq91 ▴ 10
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0
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513
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Creating qPCRset object from Bio-Rad CFX file
htqpcr limma
4.7 years ago dbars • 0
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588
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HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
4.8 years ago jirkanov • 0
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595
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Inter-run calibration in HTqPCR R package
htqpcr R
5.0 years ago dbarscortina • 0
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633
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Import problem with HTqPCR Fluidigm 96.96
htqpcr bioconductor fluidigm biomark
5.3 years ago reed27 • 0
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609
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HTqPCR for Fluidigm Results
htqpcr fluidigm
5.3 years ago rhonce • 0
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582
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HTqPCR trouble with changeCtLayout
htqpcr qPCR
5.3 years ago samantha_jeschonek • 0
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2
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726
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Reading in delta Ct values using HTqPCR
htqpcr
updated 5.3 years ago by 47k • written 5.3 years ago by ▴ 10
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503
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Bugs in HTqPCR 1.30.0?
htqpcr
5.5 years ago h.roest • 0
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2
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941
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No differential expression with limmaCtData possible
limma htqpcr
5.5 years ago h.roest • 0
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593
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HTqPCR package: problems with the limmaCtData function
htqpcr
5.9 years ago Frederico Moraes Ferreira ▴ 100
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1
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798
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Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
6.1 years ago carine.genet • 0
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686
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re-format data for HtqPCR
HtqPCR reshape
6.3 years ago Stefany Solano • 0
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1
reply
864
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HTqPCR cannot read more recent SDS files
htqpcr
updated 6.3 years ago by • 0 • written 6.3 years ago by ▴ 40
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3
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1.0k
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HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 6.3 years ago by • 0 • written 6.3 years ago by ▴ 40
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0
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688
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Batch Correction in HTqPCR?
qPCR htqpcr
6.3 years ago bradley • 0
3
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1
reply
1.2k
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Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 6.3 years ago by ▴ 40 • written 6.6 years ago by ▴ 20
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1
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977
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HTqPCR: bug in subsetting qPCRset
HTqPCR htqpcr subsetting
updated 6.3 years ago by ▴ 40 • written 6.5 years ago by ★ 3.6k
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7
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1.7k
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Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
6.4 years ago • updated 6.3 years ago henrik.seidel ▴ 40
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591
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HTqPCR - Multiple plates for multiple samples
htqpcr
6.7 years ago Angela LR • 0
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770
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HTqPCR limma decide test issue?
limma decide test HTqPCR
6.7 years ago polemiraza ▴ 70
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1
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1.1k
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Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 6.7 years ago by • 0 • written 8.5 years ago by ▴ 830
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569
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setCategory flag and flag.pout argument problems
htqpcr
6.7 years ago h.roest • 0
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0
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775
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Combining TLDA cards for normalization
normalization microrna htqpcr
6.8 years ago jamie_jabalee • 0
1
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1.7k
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HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
7.1 years ago virginia.claudio ▴ 10
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0
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871
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Error in readCtData
htqpcr readctdata connection readlines
7.1 years ago lizhensor • 0
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0
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762
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Help with loading Data and reading Ct values
htqpcr
7.3 years ago Pheebz • 0
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0
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748
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error in reading files using HTqPCR
htqpcr
9.6 years ago • updated 7.4 years ago Alex ▴ 10
0
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1
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933
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featureNames converted to numbers in limmaCtData
limma htqpcr
7.8 years ago julio.c.silver • 0
1
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7
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1.4k
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limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 7.8 years ago by 47k • written 7.8 years ago by • 0
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1.3k
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Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
8.1 years ago H.H. • 0
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2
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943
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HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
8.5 years ago samantha.smith-4 • 0
0
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0
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825
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Bugs in HTqPCR implementation of data normalization
Normalization HTqPCR Normalization HTqPCR
8.9 years ago Peter Langfelder ★ 2.8k
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1.8k
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reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
9.1 years ago Guest User ★ 12k
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5
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1.2k
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Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 9.3 years ago by 63k • written 9.3 years ago by ▴ 50
2
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1
reply
1.0k
views
HTqPCR- gene names not maintained in limmaCtData
annotate ddCt HTqPCR annotate ddCt HTqPCR
9.3 years ago Cornwell, Adam ▴ 110
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4
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1.2k
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HTqPCR normalization issues - third posting
Normalization HTqPCR Normalization HTqPCR
updated 9.6 years ago by 1.1k • written 9.6 years ago by ▴ 330
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0
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790
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Error in heatmapSig function
HTqPCR HTqPCR
9.6 years ago Guest User ★ 12k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k
PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.
Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k
> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by ansleyharralson • 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Votes
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
Comment: Question on constructing design matrix and defining contrasts for analysis
Answer: Question on constructing design matrix and defining contrasts for analysis
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