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HTqPCR
•
reset
0
votes
0
replies
226
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
7 months ago
Javier
• 0
0
votes
0
replies
298
views
Made a pDATA manually for HTqPCR procedure
HTqPCR
phenoData
esetVis
pData
19 months ago
Marcelo Laia
▴ 450
0
votes
0
replies
317
views
Error when reading qPCR data in SDS format
HTqPCR
2.2 years ago
Nghia
• 0
1
vote
1
reply
1.1k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 2.3 years ago by
Gordon Smyth
47k • written 7.5 years ago by
sharvari gujja
▴ 40
3
votes
4
replies
2.0k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 19 months ago by
Ming
▴ 360 • written 2.3 years ago by
enricoferrero
▴ 660
0
votes
0
replies
324
views
Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
2.9 years ago
Maximilian Fuchs
• 0
0
votes
0
replies
271
views
HTqPCR package, filterCategory function
HTqPCR
filterCategory
setCategory
updated 3.4 years ago by
James W. MacDonald
63k • written 3.4 years ago by
saskia.trump
• 0
0
votes
0
replies
478
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR
grouping
visualization
R
phenoData
3.8 years ago
mohammedtoufiq91
▴ 10
0
votes
0
replies
406
views
Analyze ct data using HTqPCR
HTqPCR
R
NormqPCR
3.9 years ago
annesha
• 0
0
votes
0
replies
314
views
Error with HTqPCR rbind
HTqPCR
4.0 years ago
NAIARA GARCÍA
▴ 10
0
votes
1
reply
618
views
HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma
htqpcr
updated 2.4 years ago by
larissa.stanberry
• 0 • written 4.4 years ago by
edu.guasch
• 0
0
votes
0
replies
456
views
A problem about changeCtLayout in HTqPCR
htqpcr
4.4 years ago
tropicalis
• 0
0
votes
3
replies
679
views
Creation of qPCRset in R for HtqPCR
R
bioconductor
htqpcr
qpcrset object
4.6 years ago
mohammedtoufiq91
▴ 10
0
votes
0
replies
513
views
Creating qPCRset object from Bio-Rad CFX file
htqpcr
limma
4.7 years ago
dbars
• 0
0
votes
0
replies
588
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr
expressionset
4.8 years ago
jirkanov
• 0
0
votes
0
replies
595
views
Inter-run calibration in HTqPCR R package
htqpcr
R
5.0 years ago
dbarscortina
• 0
0
votes
0
replies
633
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr
bioconductor
fluidigm
biomark
5.3 years ago
reed27
• 0
0
votes
0
replies
609
views
HTqPCR for Fluidigm Results
htqpcr
fluidigm
5.3 years ago
rhonce
• 0
0
votes
0
replies
582
views
HTqPCR trouble with changeCtLayout
htqpcr
qPCR
5.3 years ago
samantha_jeschonek
• 0
2
votes
2
replies
726
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 5.3 years ago by
Gordon Smyth
47k • written 5.3 years ago by
Nithisha
▴ 10
0
votes
0
replies
503
views
Bugs in HTqPCR 1.30.0?
htqpcr
5.5 years ago
h.roest
• 0
1
vote
2
replies
941
views
No differential expression with limmaCtData possible
limma
htqpcr
5.5 years ago
h.roest
• 0
0
votes
0
replies
593
views
HTqPCR package: problems with the limmaCtData function
htqpcr
5.9 years ago
Frederico Moraes Ferreira
▴ 100
0
votes
1
reply
798
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
6.1 years ago
carine.genet
• 0
0
votes
0
replies
686
views
re-format data for HtqPCR
HtqPCR
reshape
6.3 years ago
Stefany Solano
• 0
0
votes
1
reply
864
views
HTqPCR cannot read more recent SDS files
htqpcr
updated 6.3 years ago by
hdvinge
• 0 • written 6.3 years ago by
henrik.seidel
▴ 40
0
votes
3
replies
1.0k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 6.3 years ago by
hdvinge
• 0 • written 6.3 years ago by
henrik.seidel
▴ 40
0
votes
0
replies
688
views
Batch Correction in HTqPCR?
qPCR
htqpcr
6.3 years ago
bradley
• 0
3
votes
1
reply
1.2k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 6.3 years ago by
henrik.seidel
▴ 40 • written 6.6 years ago by
julius
▴ 20
0
votes
1
reply
977
views
HTqPCR: bug in subsetting qPCRset
HTqPCR
htqpcr
subsetting
updated 6.3 years ago by
henrik.seidel
▴ 40 • written 6.5 years ago by
Guido Hooiveld
★ 3.6k
3
votes
7
replies
1.7k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
6.4 years ago • updated 6.3 years ago
henrik.seidel
▴ 40
0
votes
0
replies
591
views
HTqPCR - Multiple plates for multiple samples
htqpcr
6.7 years ago
Angela LR
• 0
0
votes
0
replies
770
views
HTqPCR limma decide test issue?
limma decide test
HTqPCR
6.7 years ago
polemiraza
▴ 70
0
votes
1
reply
1.1k
views
Possible bug in setCategory function from HTqPCR package
htqpcr
HTqPCR
updated 6.7 years ago by
h.roest
• 0 • written 8.5 years ago by
Matthew McCall
▴ 830
0
votes
0
replies
569
views
setCategory flag and flag.pout argument problems
htqpcr
6.7 years ago
h.roest
• 0
0
votes
0
replies
775
views
Combining TLDA cards for normalization
normalization
microrna
htqpcr
6.8 years ago
jamie_jabalee
• 0
1
vote
0
replies
1.7k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR
readCtData
Heidi Dvinge
7.1 years ago
virginia.claudio
▴ 10
0
votes
0
replies
871
views
Error in readCtData
htqpcr
readctdata
connection
readlines
7.1 years ago
lizhensor
• 0
0
votes
0
replies
762
views
Help with loading Data and reading Ct values
htqpcr
7.3 years ago
Pheebz
• 0
0
votes
0
replies
748
views
error in reading files using HTqPCR
htqpcr
9.6 years ago • updated 7.4 years ago
Alex
▴ 10
0
votes
1
reply
933
views
featureNames converted to numbers in limmaCtData
limma
htqpcr
7.8 years ago
julio.c.silver
• 0
1
vote
7
replies
1.4k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma
ndups
htqpcr
software error
updated 7.8 years ago by
Gordon Smyth
47k • written 7.8 years ago by
julio.c.silver
• 0
0
votes
0
replies
1.3k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr
dataimport
8.1 years ago
H.H.
• 0
0
votes
2
replies
943
views
HTqPCR + setting flags as unreliable problem
htqpcr
flags
setCategory
8.5 years ago
samantha.smith-4
• 0
0
votes
0
replies
825
views
Bugs in HTqPCR implementation of data normalization
Normalization
HTqPCR
Normalization
HTqPCR
8.9 years ago
Peter Langfelder
★ 2.8k
0
votes
0
replies
1.8k
views
reading qRT-PCR data
ddCt
HTqPCR
ReadqPCR
ddCt
HTqPCR
ReadqPCR
9.1 years ago
Guest User
★ 12k
0
votes
5
replies
1.2k
views
Reading in mutiple files using readCtData
HTqPCR
HTqPCR
updated 9.3 years ago by
James W. MacDonald
63k • written 9.3 years ago by
Norm Allaire
▴ 50
2
votes
1
reply
1.0k
views
HTqPCR- gene names not maintained in limmaCtData
annotate
ddCt
HTqPCR
annotate
ddCt
HTqPCR
9.3 years ago
Cornwell, Adam
▴ 110
0
votes
4
replies
1.2k
views
HTqPCR normalization issues - third posting
Normalization
HTqPCR
Normalization
HTqPCR
updated 9.6 years ago by
Levi Waldron
1.1k • written 9.6 years ago by
alessandro.guffanti@genomnia.com
▴ 330
0
votes
0
replies
790
views
Error in heatmapSig function
HTqPCR
HTqPCR
9.6 years ago
Guest User
★ 12k
50 results • Page
1 of 1
Recent ...
Replies
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl
by
ansleyharralson
• 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Votes
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
Comment: Question on constructing design matrix and defining contrasts for analysis
Answer: Question on constructing design matrix and defining contrasts for analysis
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