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HTqPCR
•
reset
0
votes
0
replies
36
views
Error when reading qPCR data in SDS format
HTqPCR
5 days ago
Nghia
• 0
1
vote
1
reply
683
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 10 weeks ago by
Gordon Smyth
42k • written 5.3 years ago by
sharvari gujja
▴ 30
3
votes
3
replies
176
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 10 weeks ago by
Gordon Smyth
42k • written 10 weeks ago by
enricoferrero
▴ 570
0
votes
0
replies
52
views
Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
9 months ago
Maximilian Fuchs
• 0
0
votes
0
replies
62
views
HTqPCR package, filterCategory function
HTqPCR
filterCategory
setCategory
updated 15 months ago by
James W. MacDonald
56k • written 15 months ago by
saskia.trump
• 0
0
votes
0
replies
123
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR
grouping
visualization
R
phenoData
20 months ago
mohammedtoufiq91
• 0
0
votes
0
replies
142
views
Analyze ct data using HTqPCR
HTqPCR
R
NormqPCR
21 months ago
annesha
• 0
0
votes
0
replies
119
views
Error with HTqPCR rbind
HTqPCR
22 months ago
NAIARA GARCÍA
▴ 10
0
votes
1
reply
295
views
HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma
htqpcr
updated 11 weeks ago by
larissa.stanberry
• 0 • written 2.3 years ago by
edu.guasch
• 0
0
votes
0
replies
206
views
A problem about changeCtLayout in HTqPCR
htqpcr
2.3 years ago
tropicalis
• 0
0
votes
3
replies
328
views
Creation of qPCRset in R for HtqPCR
R
bioconductor
htqpcr
qpcrset object
2.5 years ago
mohammedtoufiq91
• 0
0
votes
0
replies
249
views
Creating qPCRset object from Bio-Rad CFX file
htqpcr
limma
2.5 years ago
dbars
• 0
0
votes
0
replies
292
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr
expressionset
2.7 years ago
jirkanov
• 0
0
votes
0
replies
316
views
Inter-run calibration in HTqPCR R package
htqpcr
R
2.8 years ago
dbarscortina
• 0
0
votes
0
replies
313
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr
bioconductor
fluidigm
biomark
3.1 years ago
reed27
• 0
0
votes
0
replies
314
views
HTqPCR for Fluidigm Results
htqpcr
fluidigm
3.1 years ago
rhonce
• 0
0
votes
0
replies
364
views
HTqPCR trouble with changeCtLayout
htqpcr
qPCR
3.2 years ago
samantha_jeschonek
• 0
2
votes
2
replies
433
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 3.2 years ago by
Gordon Smyth
42k • written 3.2 years ago by
Nithisha
▴ 10
0
votes
0
replies
312
views
Bugs in HTqPCR 1.30.0?
htqpcr
3.4 years ago
h.roest
• 0
1
vote
2
replies
587
views
No differential expression with limmaCtData possible
limma
htqpcr
3.4 years ago
h.roest
• 0
0
votes
0
replies
378
views
HTqPCR package: problems with the limmaCtData function
htqpcr
3.7 years ago
Frederico Moraes Ferreira
▴ 100
0
votes
1
reply
522
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
4.0 years ago
carine.genet
• 0
0
votes
0
replies
493
views
re-format data for HtqPCR
HtqPCR
reshape
4.1 years ago
Stefany Solano
• 0
0
votes
1
reply
569
views
HTqPCR cannot read more recent SDS files
htqpcr
updated 4.2 years ago by
hdvinge
• 0 • written 4.2 years ago by
henrik.seidel
▴ 40
0
votes
3
replies
670
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 4.2 years ago by
hdvinge
• 0 • written 4.2 years ago by
henrik.seidel
▴ 40
0
votes
0
replies
471
views
Batch Correction in HTqPCR?
qPCR
htqpcr
4.2 years ago
bradley
• 0
3
votes
1
reply
913
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 4.2 years ago by
henrik.seidel
▴ 40 • written 4.4 years ago by
julius
▴ 20
0
votes
1
reply
676
views
HTqPCR: bug in subsetting qPCRset
HTqPCR
htqpcr
subsetting
updated 4.2 years ago by
henrik.seidel
▴ 40 • written 4.4 years ago by
Guido Hooiveld
★ 2.9k
3
votes
7
replies
1.1k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
4.2 years ago
henrik.seidel
▴ 40
0
votes
0
replies
392
views
HTqPCR - Multiple plates for multiple samples
htqpcr
4.5 years ago
Angela LR
• 0
0
votes
0
replies
569
views
HTqPCR limma decide test issue?
limma decide test
HTqPCR
4.5 years ago
polemiraza
▴ 60
0
votes
1
reply
849
views
Possible bug in setCategory function from HTqPCR package
htqpcr
HTqPCR
updated 4.5 years ago by
h.roest
• 0 • written 6.4 years ago by
Matthew McCall
▴ 830
0
votes
0
replies
392
views
setCategory flag and flag.pout argument problems
htqpcr
4.5 years ago
h.roest
• 0
0
votes
0
replies
470
views
Combining TLDA cards for normalization
normalization
microrna
htqpcr
4.7 years ago
jamie_jabalee
• 0
1
vote
0
replies
1.3k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR
readCtData
Heidi Dvinge
5.0 years ago • updated 4.9 years ago
virginia.claudio
▴ 10
0
votes
0
replies
641
views
Error in readCtData
htqpcr
readctdata
connection
readlines
5.0 years ago
lizhensor
• 0
0
votes
0
replies
575
views
Help with loading Data and reading Ct values
htqpcr
5.1 years ago
Pheebz
• 0
0
votes
0
replies
561
views
error in reading files using HTqPCR
htqpcr
7.5 years ago • updated 5.3 years ago
Alex
▴ 10
0
votes
1
reply
700
views
featureNames converted to numbers in limmaCtData
limma
htqpcr
5.6 years ago
julio.c.silver
• 0
1
vote
7
replies
968
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma
ndups
htqpcr
software error
updated 5.7 years ago by
Gordon Smyth
42k • written 5.7 years ago by
julio.c.silver
• 0
0
votes
0
replies
1.0k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr
dataimport
5.9 years ago
H.H.
• 0
0
votes
2
replies
667
views
HTqPCR + setting flags as unreliable problem
htqpcr
flags
setCategory
6.3 years ago
samantha.smith-4
• 0
0
votes
0
replies
630
views
Bugs in HTqPCR implementation of data normalization
Normalization
HTqPCR
Normalization
HTqPCR
6.8 years ago
Peter Langfelder
★ 2.6k
0
votes
0
replies
1.4k
views
reading qRT-PCR data
ddCt
HTqPCR
ReadqPCR
ddCt
HTqPCR
ReadqPCR
6.9 years ago
Guest User
★ 12k
0
votes
5
replies
882
views
Reading in mutiple files using readCtData
HTqPCR
HTqPCR
updated 7.1 years ago by
James W. MacDonald
56k • written 7.1 years ago by
Norm Allaire
▴ 50
2
votes
1
reply
694
views
HTqPCR- gene names not maintained in limmaCtData
annotate
ddCt
HTqPCR
annotate
ddCt
HTqPCR
7.1 years ago
Cornwell, Adam
▴ 110
0
votes
4
replies
740
views
HTqPCR normalization issues - third posting
Normalization
HTqPCR
Normalization
HTqPCR
updated 7.4 years ago by
Levi Waldron
1.1k • written 7.4 years ago by
alessandro.guffanti@genomnia.com
▴ 330
0
votes
0
replies
595
views
Error in heatmapSig function
HTqPCR
HTqPCR
7.4 years ago
Guest User
★ 12k
0
votes
5
replies
727
views
HTqPCR normalization issues - third posting
Normalization
HTqPCR
Normalization
HTqPCR
updated 7.5 years ago by
James W. MacDonald
56k • written 7.5 years ago by
Guest User
★ 12k
0
votes
0
replies
560
views
HTqPCR normalization issues again
Normalization
HTqPCR
Normalization
HTqPCR
7.5 years ago
Guest User
★ 12k
130 results • Page
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Answer: Differential Transcript Usage: complex factorial design
by
Gordon Smyth
42k
edgeR does differential expression for transcripts via the catchSalmon function followed the usual edgeR pipelines as you would do for gene…
Comment: RSamtools idxstatsBam not working with remote bam file
by
mja18
▴ 30
Thanks Martin. Yes, that works.
Answer: RSamtools idxstatsBam not working with remote bam file
by
Martin Morgan
25k
Can you tell me if the following works for you? In a new R session ```{r} library(Rsamtools) setMethod(idxstatsBam, "BamFile", …
Comment: Aspli: error with gbCounts
by
achernomoretz
• 0
Hi Jeremy. We got it and we are working on the issue. Thanks for your patience. A
Comment: Aspli: error with gbCounts
by
jbono
• 0
Sorry, I forgot to respond here that I sent the file via email. Please let me know if you didn't receive it, thanks!
Votes
Answer: RSamtools idxstatsBam not working with remote bam file
Running > 100 samples per group - memory issues
R failing to load genome files from EnsDb.Hsapiens.v86
Comment: TCGA data analysis
Comment: BSGenome Forge for non-model organism
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