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Gordon Smyth
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Replies
Comment: 'path' must be string
by
James W. MacDonald
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Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
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cpierce2
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0
I ran the debugger and this is the line that causes the error:
```
if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
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Robert
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Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
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FYI (since I just finalized a run with `salmon`).
For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
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Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
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