Bioconductor Nondetects

Showing : nondetects • reset

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504

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nondetects qPCR qPCRData

3.0 years ago jhackett ▴ 30

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1.8k

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nondetects software error

updated 6.2 years ago by corocla • 0 • written 6.3 years ago by Ryan C. Thompson ★ 7.9k

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617

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bug nondetects HTqPCR

updated 6 months ago by Nat.Nataren • 0 • written 8 months ago by Ed Siefker ▴ 230

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261

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qPCR nondetects

6 months ago Ed Siefker ▴ 230

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856

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nondetects qpcrImpute

updated 5.0 years ago by Matthew McCall ▴ 830 • written 5.2 years ago by D.J.Coulson2 • 0

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2.1k

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qPCRset object nondetects r package txt

updated 7 months ago by Nat.Nataren • 0 • written 6.3 years ago by s.m.may • 0

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1.4k

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nondetects R PCR

updated 6.8 years ago by Matthew McCall ▴ 830 • written 6.8 years ago by garciaii_antuerpia • 0

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Votes

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

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