Biostar Omixer

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Omixer

21 months ago • updated 8 months ago Lluís Revilla Sancho ▴ 700

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SpatialData scRNAseq SingleCell Omixer

12 months ago Sebastian Lewandowski • 0

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update Omixer maintainer

updated 2.2 years ago by shepherl 3.4k • written 2.2 years ago by l.j.sinke • 0

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Comment: pathview says my nonmodel species is unknown: "species invalid" by Guido Hooiveld ★ 3.5k

Does a restart of R help? Does a reinstall of the library `png` help? In a fresh R-session, what is the output from `BiocManager::valid()…

Comment: Don't let TopGo to trimm long GO names by James W. MacDonald 62k

Did you not notice that this has been answered *as part of this thread that you posted in?*

Comment: pathview says my nonmodel species is unknown: "species invalid" by nute11a • 0

Hi Luo, thank you so much for your helpful comment. While I was able to get this to work and visualize my interesting KEGG pathways (yay!) …

Comment: Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA) by Wolfgang Huber 13k

Hi Ben, your first step should be to upgrade to the current versions of R and Bioconductor. There is really little point in trouble-shooti…

Answer: Is ther an annotation package for sheep (Ovis aries) by Guido Hooiveld ★ 3.5k

Yes, there is! An `EnsDb` for sheep can be obtained through the so-called `AnnotationHub`. See James' and my posts in the thread linked t…

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FDR and padj in deseq and edger

Is ther an annotation package for sheep (Ovis aries)

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Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k