Bioconductor OpenPrimeR

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openPrimeR

written 3.3 years ago by marongiu.luigi • 0

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1.1k

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openPrimeR

3.2 years ago marongiu.luigi • 0

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738

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openPrimeR

updated 14 months ago by Santiago Edilberto • 0 • written 3.2 years ago by marongiu.luigi • 0

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672

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openPrimeRui openPrimeR

5.0 years ago Vinicius Henrique da Silva ▴ 40

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651

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openPrimeR

updated 24 months ago by matthias-doering ▴ 40 • written 2.0 years ago by wnussbau • 0

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633

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PCRmultiplex openPrimeR

15 months ago Santiago Edilberto • 0

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621

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openPrimeR

updated 2.8 years ago by matthias-doering ▴ 40 • written 2.8 years ago by benedikt.kirchner • 0

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587

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openPrimeR

updated 2.9 years ago by matthias-doering ▴ 40 • written 3.2 years ago by marongiu.luigi • 0

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358

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openPrimeR

updated 14 months ago by Basti ▴ 780 • written 14 months ago by Santiago Edilberto • 0

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Votes

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

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