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padj
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0
votes
5
replies
2.6k
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NA in padj in the DEXSeq package
dexseq
padj
8.3 years ago
gil.hornung
• 0
6
votes
2
replies
4.8k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
jjinhyoungkim
▴ 20
1
vote
3
replies
4.2k
views
deseq: all padj values equal to 1
deseq
padj
updated 9.0 years ago by
Michael Love
41k • written 9.3 years ago by
ccheung
• 0
0
votes
1
reply
1.5k
views
Found consistent padj values for all the samples in DESeq2 R Package
deseq2
padj
Benjamini and hochberg consequences
affy
7.0 years ago
jignashapatel10
• 0
2
votes
5
replies
5.3k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
courtney.stairs
• 0
1
vote
5
replies
2.3k
views
Constant High Padj Values
deseq2
differential gene expression
multiple factor design
padj
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
le.alex.chang
• 0
0
votes
1
reply
619
views
How to set threshold of padj value in DeSeq2
DESeq2
padj
default
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Serena
• 0
0
votes
1
reply
1.4k
views
Change the FDR in DEXSeq
FDR
padj
updated 7.5 years ago by
Jakub
▴ 50 • written 7.5 years ago by
arom2
• 0
0
votes
1
reply
1.8k
views
Different padj value after multiple testing
deseq2
padj
multiple comparisons
differential gene expression
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
tarun2
• 0
9 results • Page
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Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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