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padj
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0
votes
5
replies
3.3k
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NA in padj in the DEXSeq package
dexseq
padj
10.1 years ago
gil.hornung
• 0
6
votes
2
replies
5.6k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 10.5 years ago by
Michael Love
43k • written 10.5 years ago by
jjinhyoungkim
▴ 20
1
vote
3
replies
5.6k
views
deseq: all padj values equal to 1
deseq
padj
updated 10.8 years ago by
Michael Love
43k • written 11.1 years ago by
ccheung
• 0
0
votes
1
reply
2.0k
views
Found consistent padj values for all the samples in DESeq2 R Package
deseq2
padj
Benjamini and hochberg consequences
affy
8.9 years ago
jignashapatel10
• 0
2
votes
5
replies
6.5k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
courtney.stairs
• 0
1
vote
5
replies
3.2k
views
Constant High Padj Values
deseq2
differential gene expression
multiple factor design
padj
updated 8.2 years ago by
Michael Love
43k • written 8.2 years ago by
le.alex.chang
• 0
0
votes
1
reply
1.9k
views
How to set threshold of padj value in DeSeq2
DESeq2
padj
default
updated 3.1 years ago by
James W. MacDonald
68k • written 3.1 years ago by
Serena
• 0
0
votes
1
reply
2.0k
views
Change the FDR in DEXSeq
FDR
padj
updated 9.4 years ago by
Jakub
▴ 50 • written 9.4 years ago by
arom2
• 0
0
votes
1
reply
2.5k
views
Different padj value after multiple testing
deseq2
padj
multiple comparisons
differential gene expression
updated 8.9 years ago by
Michael Love
43k • written 8.9 years ago by
tarun2
• 0
9 results • Page
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Answer: Unable to find ENTREZ IDs
by
James W. MacDonald
68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
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Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
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Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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