Bioconductor Multiple comparisons

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922

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deseq2 deseq rna-seq multiple comparisons

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by rbronste ▴ 60

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856

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edger multifactorial design multiple comparisons differential gene expression

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by svlachavas ▴ 830

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1.5k

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deseq2 multiple comparisons contrast

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by serpalma.v ▴ 60

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1.8k

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deseq2 padj multiple comparisons differential gene expression

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by tarun2 • 0

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4.0k

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rnaseq multiple comparisons post hoc deseq2

7.9 years ago • updated 7.2 years ago laianavarromartin ▴ 20

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4.9k

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limma design matrix makecontrasts multiple comparisons

7.2 years ago annabelle.congras ▴ 10

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2.8k

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qvalue pvalue r multiple comparisons

updated 7.3 years ago by Storey, John D. ▴ 100 • written 7.3 years ago by tombernardryan ▴ 50

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1.9k

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limma multiple factor design multiple comparisons

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by xluong • 0

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2.1k

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deseq2 rnaseq contrast multiple comparisons fdrtool

7.9 years ago sebastiano.curreli • 0

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1.3k

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rnaseq pairwise multiple comparisons deseq2

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by hamaor • 0

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16k

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limma illumina differential gene expression multiple comparisons design matrix

8.9 years ago • updated 8.8 years ago svlachavas ▴ 830

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3.9k

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edger design and contrast matrix multiple factor design multiple comparisons

updated 8.8 years ago by James W. MacDonald 65k • written 8.8 years ago by mouchkam ▴ 20

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3.3k

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deseq2 multiple comparisons

8.9 years ago annalisa.giampetruzzi • 0

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5.7k

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edger multiple comparisons anova glm

updated 8.9 years ago by Ryan C. Thompson ★ 7.9k • written 8.9 years ago by chickenchamp4 ▴ 20

14 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170

Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…

Answer: limma-voom: Calculate the log-fold change in gene expression within a sample by Gordon Smyth 50k

No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …

Comment: Error EPICv2 ChAMP by James W. MacDonald 65k

You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…

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Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Answer: Differentially expressed genes in monocle pseudotime

Answer: DESeq2 - dispersion estimation when there is none

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Scholar to Gordon Smyth 50k