Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
paired analysis
•
reset
1
vote
2
replies
2.5k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
5.9 years ago
Mozart
▴ 30
2
votes
4
replies
1.9k
views
What's the best way to use "semi" technical replicates with biological replicates?
limma
technical replicates
biological replicates
paired analysis
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
paul.alto
▴ 50
0
votes
0
replies
909
views
Paired DE analysis in edgeR with trios of samples while blocking for various confounders
edger
rnaseq
paired analysis
design matrix
6.0 years ago
svlachavas
▴ 840
0
votes
2
replies
928
views
Comparing groups with paired samples by using limma
limma
paired analysis
updated 6.1 years ago by
Gordon Smyth
52k • written 6.1 years ago by
annadv77
• 0
1
vote
8
replies
1.3k
views
Unexpected differences in results from paired analysis with DESeq2
DESEq2
paired analysis
factor levels
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
luisa.bresadola
• 0
5 results • Page
1 of 1
Recent ...
Replies
Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati
by
Mei
• 0
I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…
Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
by
Arctic
• 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
by
Aaron Lun
★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2
by
ATpoint
★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor
by
slizchap
• 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Votes
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
Awards
• All
Popular Question
to
Marianna
▴ 20
Popular Question
to
Dunois
• 0
Popular Question
to
igor
▴ 50
Popular Question
to
Gordon Smyth
52k
Popular Question
to
Arctic
• 0
Locations
• All
United States,
6 minutes ago
United States,
9 minutes ago
Mexico,
35 minutes ago
Iran,
1 hour ago
United Kingdom,
2 hours ago
Traffic: 952 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6