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Showing :
paired analysis
•
reset
1
vote
2
replies
2.0k
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adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
5.1 years ago
Mozart
▴ 30
2
votes
4
replies
1.5k
views
What's the best way to use "semi" technical replicates with biological replicates?
limma
technical replicates
biological replicates
paired analysis
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
paul.alto
▴ 50
0
votes
0
replies
744
views
Paired DE analysis in edgeR with trios of samples while blocking for various confounders
edger
rnaseq
paired analysis
design matrix
5.2 years ago
svlachavas
▴ 830
0
votes
2
replies
728
views
Comparing groups with paired samples by using limma
limma
paired analysis
updated 5.4 years ago by
Gordon Smyth
51k • written 5.4 years ago by
annadv77
• 0
1
vote
8
replies
1.0k
views
Unexpected differences in results from paired analysis with DESeq2
DESEq2
paired analysis
factor levels
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
luisa.bresadola
• 0
5 results • Page
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Replies
Answer: Cannot connect to annotationhub server
by
Mishaal Irfan
• 0
Yes my internet connection is fine, I have checked it and also i am not behind any proxy.
Answer: Epicv2 conversion fail
by
James W. MacDonald
66k
In the double conversion, the output you supplied indicates that the number of probes is the same (453093)? The EPICv2 is only partially…
Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
by
ATpoint
★ 4.2k
Not specific for the tagged package, but generally: PCA is performed on a matrix of counts, typically normalized for library size and co…
Answer: Cannot connect to annotationhub server
by
shepherl
3.9k
Do you have a strong internet connect and/or are you behind a proxy ?
Answer: DESeq2 ML Query
by
Michael Love
42k
> What count matrix/file from tximport or DESeq2 would be advised for an ML classifier. The emphasis is on a parsimonous set of genes, that…
Votes
Answer: Ashr and IHW
Answer: Choosing an svalue threshold from apeglm shrunken results in DESeq2
Comment: DESeq2 1.20.0 lfcshrink function
A: DESeq2 1.20.0 lfcshrink function
A: DESeq2 1.20.0 lfcshrink function
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Michael Love
42k
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Yang Liao
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jonas.freimuth
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Sean Davis
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Wolfgang Huber
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