Bioconductor Technical replicates

Showing : technical replicates • reset

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675

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DRIMSeq R DTU technical replicates deseq2

updated 2.9 years ago by Kevin Blighe 3.8k • written 2.9 years ago by poecile.pal • 0

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3.0k

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limma duplicateCorrelation rna-seq technical replicates biological replicates

updated 3.6 years ago by Aaron Lun ★ 28k • written 3.7 years ago by paul.alto ▴ 50

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960

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limma technical replicates biological replicates paired analysis

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by paul.alto ▴ 50

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2.1k

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ballgown biologicalreplicates technical replicates stringtie

updated 5.5 years ago by Alyssa Frazee ▴ 210 • written 6.2 years ago by linda.boshans • 0

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4.9k

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rnaseq edger technical replicates

updated 6.0 years ago by Ryan C. Thompson 7.8k • written 6.0 years ago by alakatos ▴ 120

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3.8k

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limma microarray duplicatecorrelation technical replicates linear model

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by Eleni Christodoulou ▴ 150

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1.8k

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illumina human ht-12 v4 technical replicates

updated 7.4 years ago by Gordon Smyth 47k • written 7.4 years ago by Eleni Christodoulou ▴ 150

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2.6k

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limma technical replicates

7.5 years ago Eleni Christodoulou ▴ 150

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1.1k

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rnaseq ruvnormalize normalization technical replicates

7.5 years ago thomas.wolfe • 0

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2.4k

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limma covariate block paired samples technical replicates

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by eleonoregravier ▴ 60

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1.3k

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technical replicates

8.0 years ago sara.pegolo • 0

11 results • Page 1 of 1

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

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Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

Awards • All

Scholar to Tiago C. Silva ▴ 270