Showing : technical replicates • reset
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DRIMSeq with technical replicates
DRIMSeq R DTU technical replicates deseq2
updated 9 months ago by 2.9k • written 9 months ago by • 0
7
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7
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606
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Further clarification on when not to use duplicateCorrelation with technical replicates (RNA-seq)
limma duplicateCorrelation rna-seq technical replicates biological replicates
updated 19 months ago by ★ 26k • written 19 months ago by ▴ 50
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4
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What's the best way to use "semi" technical replicates with biological replicates?
limma technical replicates biological replicates paired analysis
updated 2.1 years ago by ★ 26k • written 2.1 years ago by ▴ 50
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7
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Handling both technical and biological replicates in Ballgown
ballgown biologicalreplicates technical replicates stringtie
updated 3.4 years ago by ▴ 210 • written 4.2 years ago by • 0
5
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4
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RNAseq with technical replicates: Does it sound right?
rnaseq edger technical replicates
updated 3.9 years ago by 7.6k • written 3.9 years ago by ▴ 110
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8
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2.8k
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Limma: fit a model with duplicateCorrelation()
limma microarray duplicatecorrelation technical replicates linear model
updated 5.3 years ago by ★ 26k • written 5.3 years ago by ▴ 150
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12
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1.1k
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Illumina HT-12.v4: Averaging of technical replicates
illumina human ht-12 v4 technical replicates
updated 5.3 years ago by 42k • written 5.3 years ago by ▴ 150
9
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1.7k
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Error when fitting linear model with technical replicates and blocking variable
limma technical replicates
5.4 years ago Eleni Christodoulou ▴ 150
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
5.4 years ago thomas.wolfe • 0
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limma with continous covariate depending on gene, 2 block variables, pairing and technical replicates
limma covariate block paired samples technical replicates
updated 5.5 years ago by ★ 26k • written 5.5 years ago by ▴ 60
1
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6
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998
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technical replicates different library preparations
technical replicates
5.9 years ago sara.pegolo • 0
11 results • Page 1 of 1
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Comment: DEseq2 nested multi factor no replicates by melissa.mageroy • 0
Thanks for the suggestion!
Comment: Need help in running GO analysis by Rishav ▴ 10
Yes, I already solved that problem. I understand what was the problem . Thank you so much for your time
Answer: DESeq2 ashr with and without reflevels generate different log2FoldChanges by Michael Love 32k
*"How is it possible to get different log2FC using lfcShrink (ashr) by defining relevels compared to no relevels defining?"* This has be…
Comment: After having the output from SingleR for cell type annotation, what's the next s by sofiagreen72211 ▴ 10
I believe, you have a seurat object with 3 groups with barcodes. If this is the case, it's straight forward, get singleR predictions on eac…
Comment: Cannot install packages by BiocManager::install() by FairerBadge66 • 0
Thank you very much, it works, I was loosing my mind already.
Votes
Answer: Need help in running GO analysis
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
Comment: Cannot install packages by BiocManager::install()
Comment: Unable to install packages on MacOS
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