Bioconductor Rna seq

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2.1k

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deseq2 mahattan plot RNA Seq

updated 3.0 years ago by bernatgel ▴ 150 • written 4.0 years ago by adeler001 • 0

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2.6k

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batch effect limma rna seq DE

updated 3.5 years ago by Steve Lianoglou 13k • written 3.5 years ago by svlachavas ▴ 810

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500

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RNA seq cpm

updated 3.5 years ago by Kevin Blighe 3.8k • written 3.5 years ago by isabel.pieterse • 0

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648

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sgseq alternative splicing rna seq

updated 3.9 years ago by Leonard Goldstein ▴ 150 • written 3.9 years ago by 116100016 • 0

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685

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edger RNA Seq

updated 3.9 years ago by James W. MacDonald 63k • written 3.9 years ago by abf ▴ 30

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366

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rna seq

3.9 years ago adeler001 • 0

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586

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rna seq SGSeq Alternative splicing

updated 4.0 years ago by Leonard Goldstein ▴ 150 • written 4.0 years ago by 116100016 • 0

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453

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deseq2 likelihood ratio rna seq wald test

updated 4.0 years ago by Michael Love 40k • written 4.0 years ago by adeler001 • 0

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742

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volcano plot rna seq

updated 4.1 years ago by Michael Love 40k • written 4.1 years ago by adeler001 • 0

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1000

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limma voom RNA Seq Time-course experiments

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by mahes.muniandy • 0

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757

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RNA seq wgcna

updated 4.3 years ago by Peter Langfelder ★ 2.8k • written 4.3 years ago by agustin.gonvi ▴ 20

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1.7k

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rna seq trimmomatic trimming adapter trimming paired analysis

4.4 years ago Mozart ▴ 30

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1.4k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

5.6 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: tximport error: vroom by RLiu ▴ 10

Thank you for providing this clue. I never installed vroom manually. I guess it is one of dependences for tximport that automatically insta…

Comment: tximport error: vroom by RLiu ▴ 10

I checked that all `quant.sf`s have the same line number (42013 lines in each file), which is different from tx2gene (81493 lines).

Comment: tximport error: vroom by Benji Bromberg • 0

I also ran into this same issue today. All my quant.sf files are the same length, were generated within the last month, [do not contain com…

Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s by James W. MacDonald 63k

Using `.set.seed` only sets the seed for the first call to any random number generation, after which the seed is incremented. As an example…

Comment: Point mutation to corresponding amino acid by jtremblay514 • 0

You can have a look at the transvar software for this. While not in bioconductor, it works well.

Votes

tximport error: vroom

Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

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