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rna seq
•
reset
0
votes
9
replies
1.3k
views
How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 22 months ago by
bernatgel
▴ 140 • written 2.8 years ago by
adeler001
• 0
2
votes
5
replies
1.3k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 2.3 years ago by
Steve Lianoglou
13k • written 2.3 years ago by
svlachavas
▴ 800
0
votes
3
replies
283
views
Normalization of RNA seq data
RNA seq
cpm
updated 2.3 years ago by
Kevin Blighe
3.6k • written 2.3 years ago by
isabel.pieterse
• 0
3
votes
3
replies
375
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 2.7 years ago by
Leonard Goldstein
▴ 110 • written 2.7 years ago by
116100016
• 0
1
vote
4
replies
351
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 2.7 years ago by
James W. MacDonald
60k • written 2.7 years ago by
abf
▴ 30
0
votes
0
replies
219
views
searching for specific RNA sequences
rna seq
2.7 years ago
adeler001
• 0
0
votes
2
replies
350
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 2.8 years ago by
Leonard Goldstein
▴ 110 • written 2.8 years ago by
116100016
• 0
0
votes
1
reply
259
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 2.9 years ago by
Michael Love
37k • written 2.9 years ago by
adeler001
• 0
0
votes
2
replies
462
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 3.0 years ago by
Michael Love
37k • written 3.0 years ago by
adeler001
• 0
1
vote
5
replies
599
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 3.1 years ago by
Aaron Lun
★ 27k • written 3.1 years ago by
mahes.muniandy
• 0
5
votes
3
replies
479
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 3.2 years ago by
Peter Langfelder
★ 2.7k • written 3.2 years ago by
agustin.gonvi
▴ 10
1
vote
2
replies
1.0k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
3.3 years ago
Mozart
▴ 20
0
votes
0
replies
1.1k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
4.5 years ago
lawarde.ankita1
▴ 20
13 results • Page
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Replies
Comment: unable to install.packages("spatialLIBD")
by
shepherl
3.2k
I guess it depends on what you mean by only getting the datasets? You can clone the package with `git clone https://git.bioconductor.org/p…
Comment: Which is the best type of data for correlation or survival analysis
by
Yang Shi
• 0
Thanks for your reply and your excellent package! Could you please tell me the **difference bwtween vst transformed data and the "vtd" base…
Answer: MAI error - vector size limit
by
jonathan.dekermanjian
• 0
Thank you for the reproducible example. This is an error with R not allowing the random forest algorithm to exceed the set memory size. I w…
Comment: CHIPQC error regarding BiocParallel
by
arisarkar88
• 0
Thanks so much!
Comment: MAI error - vector size limit
by
Hans-Ulrich Klein
▴ 330
Here is a reproducible example. I believe any larger dataset will crash: library(MAI) values <- rnorm(8000*300) values[sample…
Votes
C: No genes found in universe : goana error
A: No genes found in universe : goana error
No genes found in universe : goana error
Answer: Pathview unable to download pathways
Comment: Which is the best type of data for correlation or survival analysis
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