Bioconductor Rna seq

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2.5k

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deseq2 mahattan plot RNA Seq

updated 3.5 years ago by bernatgel ▴ 150 • written 4.5 years ago by adeler001 • 0

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3.1k

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batch effect limma rna seq DE

updated 4.0 years ago by Steve Lianoglou ★ 13k • written 4.0 years ago by svlachavas ▴ 830

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639

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RNA seq cpm

updated 4.0 years ago by Kevin Blighe ★ 3.9k • written 4.0 years ago by isabel.pieterse • 0

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862

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 170 • written 4.4 years ago by 116100016 • 0

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880

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edger RNA Seq

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by abf ▴ 30

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483

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rna seq

4.4 years ago adeler001 • 0

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762

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rna seq SGSeq Alternative splicing

updated 4.5 years ago by Leonard Goldstein ▴ 170 • written 4.5 years ago by 116100016 • 0

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543

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deseq2 likelihood ratio rna seq wald test

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by adeler001 • 0

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931

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volcano plot rna seq

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by adeler001 • 0

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1.2k

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limma voom RNA Seq Time-course experiments

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by mahes.muniandy • 0

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930

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RNA seq wgcna

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by agustin.gonvi ▴ 20

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1.9k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.0 years ago Mozart ▴ 30

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1.6k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.2 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…

Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0

Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.

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Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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