Showing : paired-end reads • reset
0
votes
2
replies
1.3k
views
DiffBind PE data
diffbind paired-end reads
updated 4.1 years ago by ★ 5.2k • written 7.9 years ago by ▴ 60
0
votes
0
replies
1.7k
views
Merge two BAM files into one paired-end file
paired-end reads bam file
7.1 years ago ioannis.vardaxis ▴ 30
0
votes
1
reply
1.4k
views
why merged paired end reads still have strand infomation?
dnaseq rtracklayer paired-end reads
7.5 years ago zwfanwz678 • 0
1
vote
0
replies
1.3k
views
generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps paired-end reads readGAlignmentPairs
7.7 years ago teresati ▴ 10
0
votes
0
replies
1.1k
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr quasr error paired-end reads rnaseq
7.9 years ago guillaume.dachy • 0
0
votes
0
replies
1.2k
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr paired-end reads rnaseq
8.0 years ago guillaume.dachy • 0
0
votes
0
replies
1.1k
views
Error preprocessReads : Error in writeFastq
quasr rnaseq paired-end reads
8.0 years ago guillaume.dachy • 0
1
vote
2
replies
1.7k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools paired-end reads countbam
updated 8.2 years ago by 25k • written 8.2 years ago by ★ 1.5k
8 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
WEHI, Melbourne, Australia, 1 minute ago
The city by the bay, 3 hours ago
United Kingdom, 4 hours ago
United States, 5 hours ago
UPF, Barcelona, Spain, 7 hours ago
Traffic: 569 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6