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pairwise
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pairwise comparison + interaction term in DESeq2
DESeq2
interaction
pairwise
2.8 years ago
Lucas
• 0
0
votes
3
replies
917
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise
deseq2
extracting contrasts
resultsnames
results deseq2
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
Ricardo Rodrigues
• 0
0
votes
0
replies
891
views
pairwise dist from bam file
bam
diversity
distance
pairwise
6.6 years ago
achaillon
• 0
4
votes
12
replies
3.2k
views
pairwise combining factors or multifactor analysis ? (DESeq2)
deseq2
multifactor
pairwise
8.0 years ago
aziza
▴ 20
0
votes
4
replies
1.4k
views
is it possible to create this comparison?
rnaseq
pairwise
multiple comparisons
deseq2
updated 8.2 years ago by
Michael Love
42k • written 8.2 years ago by
hamaor
• 0
5 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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