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pileup
•
reset
0
votes
4
replies
1.3k
views
pileup function not found (Rsamtools)
rsamtools
pileup
7.6 years ago
oscar puig
• 0
4
votes
4
replies
2.4k
views
Perform a pileup on the last nucleotides of each read with variable length reads
pileup
rsamtools
bam
genomicalignments
updated 8.9 years ago by
Nathaniel Hayden
▴ 180 • written 8.9 years ago by
Sam Buckberry
• 0
1
vote
6
replies
2.1k
views
Rsamtools pileup function
Rsamtools
pileup
number of reads
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
mgray
▴ 10
2
votes
1
reply
1.0k
views
inconsistent results from applyPileups and pileLettersAt
Rsamtools
GAlignments
pileup
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
jesper.gadin
▴ 10
7
votes
2
replies
1.0k
views
is the Rsamtools::pileup example broken?
pileup
rsamtools
updated 6.2 years ago by
Martin Morgan
25k • written 6.3 years ago by
Jeremy Leipzig
▴ 70
0
votes
0
replies
450
views
Rsamtools pileup help
Rsamtools
pileup
14 months ago
JoeMG
• 0
0
votes
3
replies
1.4k
views
Rsamtools PileupParam set minimum depth to zero
rsamtools
pileup
8.2 years ago
komal.rathi
▴ 120
0
votes
0
replies
740
views
How to get sequence size of insertion/deletion in sam file pileup (e.g. using Rsamtools)
Rsamtools
pileup
insertion
deletion
3.7 years ago
madsheilskov
▴ 10
0
votes
0
replies
335
views
Pysam pileup and Rsamtools pileup output discrepancy
Pysam
pileup
Rsamtools
RNASeq
6 months ago
Xinqi
• 0
0
votes
0
replies
370
views
[Rsamtools] pileup option max_depth behaviour
Rsamtools
pileup
9 months ago
romain.lannes
• 0
0
votes
0
replies
419
views
How to speed up pileup from Rsamtools?
Rsamtools
pileup
12 months ago
alexandr.gopanenko
▴ 50
1
vote
6
replies
2.4k
views
different results between Rsamtools::pileup and samtools depth
rsamtools
pileup
8.0 years ago
TimothéeFlutre
▴ 80
12 results • Page
1 of 1
Recent ...
Replies
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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