Bioconductor Pileup

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2.4k

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pileup rsamtools bam genomicalignments

updated 8.9 years ago by Nathaniel Hayden ▴ 180 • written 8.9 years ago by Sam Buckberry • 0

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2.4k

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rsamtools pileup

8.0 years ago TimothéeFlutre ▴ 80

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2.1k

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Rsamtools pileup number of reads

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by mgray ▴ 10

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1.4k

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rsamtools pileup

8.2 years ago komal.rathi ▴ 120

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1.3k

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rsamtools pileup

7.6 years ago oscar puig • 0

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1.0k

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Rsamtools GAlignments pileup

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by jesper.gadin ▴ 10

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1.0k

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pileup rsamtools

updated 6.2 years ago by Martin Morgan 25k • written 6.3 years ago by Jeremy Leipzig ▴ 70

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740

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Rsamtools pileup insertion deletion

3.7 years ago madsheilskov ▴ 10

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450

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Rsamtools pileup

14 months ago JoeMG • 0

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419

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Rsamtools pileup

12 months ago alexandr.gopanenko ▴ 50

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370

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Rsamtools pileup

9 months ago romain.lannes • 0

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335

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Pysam pileup Rsamtools RNASeq

6 months ago Xinqi • 0

12 results • Page 1 of 1

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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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Popular Question to rohitsatyam102 ▴ 20