Bioconductor Plant

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 5 months ago by Daniele • 0 • written 6.0 years ago by Guido Hooiveld ★ 4.1k

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3

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plant Transcriptomics DESeq2 r

updated 2.6 years ago by Basti ▴ 780 • written 2.6 years ago by cicely.day • 0

1

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4

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deseq2 goseq htseqcounts rnaseq plant

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by Ben Mansfeld • 0

3 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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