Bioconductor Plgem

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PLGEM

8.9 years ago pstopka • 0

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miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem

11.6 years ago Norman Pavelka ▴ 140

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plgem plgem

updated 11.9 years ago by Olli Kannaste ▴ 20 • written 11.9 years ago by Norman Pavelka ▴ 140

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Biobase plgem Biobase plgem

12.6 years ago Norman Pavelka ▴ 140

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Biobase plgem Biobase plgem

12.6 years ago Norman Pavelka ▴ 140

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limma plgem limma plgem

12.6 years ago Norman Pavelka ▴ 140

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limma plgem limma plgem

12.6 years ago Norman Pavelka ▴ 140

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limma plgem limma plgem

12.6 years ago Amin Moghaddasi ▴ 130

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Microarray Proteomics limma plgem Microarray Proteomics limma plgem

updated 13.5 years ago by Yolande Tra ▴ 120 • written 13.5 years ago by Pavelka, Norman ▴ 70

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plgem cycle plgem cycle

13.5 years ago Pavelka, Norman ▴ 70

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plgem plgem

13.7 years ago Pavelka, Norman ▴ 70

11 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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