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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
9 months ago devarti.mahakalkar • 0
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Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 4.2 years ago by ★ 4.8k • written 4.2 years ago by • 0
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Answer: DiffBind - question on the use of filtered or unfiltered input data by apkffh4x • 0
Yes, you can use HR peaks as input to DiffBind, especially if your goal is high-confidence differential binding, but using all peaks provid…
Answer: Log2foldchange strange behavior by ATpoint ★ 4.8k
The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…
Comment: DeSeq Strategies for run to run Replication by i.c.denhond • 0
Dear Michael, could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …
Comment: Log2foldchange strange behavior by RambakKulit • 0
Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…
Comment: Log2foldchange strange behavior by ATpoint ★ 4.8k
This cannot be answered here like this. Your results tables are not direct DESeq2 output, maybe it's a merging error during generation of t…
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