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Help with installing Biocmanager
pd.rabgene.1.0.st PolyPhen
updated 4.1 years ago by ★ 5.0k • written 4.1 years ago by • 0
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ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 12.0 years ago by ★ 6.8k • written 12.1 years ago by ▴ 30
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zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation
12.2 years ago Valerie Obenchain ★ 6.8k
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zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
Annotation PolyPhen SIFT Annotation PolyPhen SIFT
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ★ 3.4k
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Useful information about Ensembl release 72 mart databases
PolyPhen PolyPhen
12.6 years ago Thomas Maurel ▴ 800
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1.9k
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Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
12.8 years ago Thomas Maurel ▴ 800
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1.9k
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Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
13.7 years ago Thomas Maurel ▴ 800
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Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by TikTs3a3ssalpc • 0
In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
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