Bioconductor Prettyprint

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msa prettyprint

updated 4.0 years ago by UBod ▴ 300 • written 4.0 years ago by SB775 • 0

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msa decipher output prettyPrint

updated 4.7 years ago by UBod ▴ 300 • written 4.7 years ago by matamunee • 0

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prettyPrint Chimera

updated 7.8 years ago by mrp • 0 • written 8.2 years ago by anders • 0

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Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Charles • 0

I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

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Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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