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Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
3.7 years ago
Jamie
• 0
0
votes
3
replies
2.9k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 5.5 years ago by
UBod
▴ 300 • written 5.5 years ago by
matamunee
• 0
3
votes
6
replies
2.4k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 6.4 years ago by
Stephanie M. Gogarten
▴ 890 • written 6.4 years ago by
lassana.a.samarakoon
▴ 10
0
votes
3
replies
1.9k
views
MEDIPS - Annotation output explanation
MEDIPS
Output
7.8 years ago
vjain
• 0
2
votes
8
replies
5.3k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 8.2 years ago by
Gordon Smyth
53k • written 8.2 years ago by
harelarik
▴ 60
1
vote
1
reply
2.4k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 8.6 years ago by
Aaron Lun
★ 29k • written 8.6 years ago by
heikki.sarin
▴ 10
2
votes
9
replies
5.0k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
9.1 years ago
Olorin
▴ 50
2
votes
2
replies
1.8k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 9.3 years ago by
chen_hao
▴ 30 • written 9.3 years ago by
cjackson13
• 0
0
votes
5
replies
7.5k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
amyfm
▴ 10
9 results • Page
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Answer: bcftools norm Equivalent
by
a2a2hd42aa
• 0
it lacks a direct, single function equivalent to bcftools norm for variant normalization. Bioinformaticians often bridge this gap by using …
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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