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Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
17 months ago
Jamie
• 0
0
votes
3
replies
1.4k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.2 years ago by
UBodenhofer
▴ 290 • written 3.2 years ago by
matamunee
• 0
3
votes
6
replies
1.2k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.1 years ago by
lassana.a.samarakoon
▴ 10
0
votes
3
replies
1.1k
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MEDIPS - Annotation output explanation
MEDIPS
Output
5.6 years ago
vjain
• 0
2
votes
8
replies
3.9k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 6.0 years ago by
Gordon Smyth
48k • written 6.0 years ago by
harelarik
▴ 60
1
vote
1
reply
1.5k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
heikki.sarin
▴ 10
2
votes
9
replies
2.9k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
6.8 years ago
Olorin
▴ 50
2
votes
2
replies
1.2k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.1 years ago by
chen_hao
▴ 30 • written 7.1 years ago by
cjackson13
• 0
0
votes
5
replies
6.0k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
amyfm
▴ 10
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Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
ATpoint
★ 3.6k
I don't follow what you mean by "Normal" but in general, when you run code and it returns different results indicates that you might have o…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
Thank you for your reply, but for some reason, when I ran this code yesterday, it was normal
Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
by
Aastha Kapoor
• 0
Thankyou so much for answering. I was wondering how do I link my created database (using makeorgPackagefromNCBI) for KEGG and GO analysis. …
Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
by
Guido Hooiveld
★ 3.8k
Please show the lines of code you tried, as well as the content of your input files. It seems you got all annotation information that is re…
Answer: Differential gene expression analysis
by
ATpoint
★ 3.6k
You cannot use genotype and condition in the same model as they're nested, meaning that some genotypes are only on Fast and others are only…
Votes
A: DSS understanding delta option and posterior probability
Comment: Ensembl down???
Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Problem loading HDF5Array in R 4.3.2
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