Bioconductor Output

Showing : output • reset

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900

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output difference

2.4 years ago Jamie • 0

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2.1k

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msa decipher output prettyPrint

updated 4.3 years ago by UBod ▴ 300 • written 4.3 years ago by matamunee • 0

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1.8k

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genesis output score

updated 5.2 years ago by Stephanie M. Gogarten ▴ 870 • written 5.2 years ago by lassana.a.samarakoon ▴ 10

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1.5k

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MEDIPS Output

6.6 years ago vjain • 0

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4.6k

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voomWithQualityWeights output

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by harelarik ▴ 60

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1.9k

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limma voom edgeR toptable output

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by heikki.sarin ▴ 10

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3.8k

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msa alignement output sorted

7.9 years ago Olorin ▴ 50

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1.5k

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cytofkit cytof write.csv output

updated 8.1 years ago by chen_hao ▴ 30 • written 8.1 years ago by cjackson13 • 0

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6.7k

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deseq2 gene columns output

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by amyfm ▴ 10

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Comment: Help using rtracklayer for gene ID extraction by Aichatou • 0

Thank you very much for the quick response. However, I am unable to reproduce the code you provided. It starts to run, then I get the error…

Answer: Deseq2 Design by James W. MacDonald 67k

Trying to use a conventional factor analysis, particularly if you are new, is not the way to go (I have been doing this for over 20 years n…

Answer: p value is 0, padj is 0 by swbarnes2 ★ 1.4k

I think the default smallest value R will return is 1x10^-300. So I'd take a look at the counts, and see if it makes sense that the p-valu…

Comment: p value is 0, padj is 0 by Michael Love 43k

``` > set.seed(1); t.test(rnorm(200,rep(c(0,80),each=100)) ~ rep(0:1,each=100))$p.value [1] 0 ```

Answer: Cannot install GO.db and org.Hs.eg.db by James W. MacDonald 67k

You might try tracing the namespace loading. ``` Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2") install("org.Hs.eg.db") ``` And see if th…

Votes

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to giulia.gentile ▴ 10