Bioconductor Chimera

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prettyPrint Chimera

updated 8.6 years ago by mrp • 0 • written 9.0 years ago by anders • 0

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chimera IRanges

updated 10.2 years ago by raffaele calogero ▴ 500 • written 10.7 years ago by kelly.rabionet ▴ 10

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fusion genes chimera star

updated 10.9 years ago by richa_r • 0 • written 11.3 years ago by am26 • 0

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chimera STAR

updated 11.0 years ago by rcaloger ▴ 500 • written 11.1 years ago by wresch • 0

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rnaseq mirna onechannelgui chimera News

11.1 years ago raffaele calogero ▴ 500

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chimera chimera

updated 17.6 years ago by Thomas Girke ★ 1.7k • written 17.6 years ago by Paul Shannon ★ 1.1k

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760