Bioconductor Probes

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avereps probes average limma Microarray

updated 21 months ago by Gordon Smyth 52k • written 21 months ago by mohammedtoufiq91 ▴ 10

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Affymetrix Illumina probes microarray annotation package

updated 5.6 years ago by Guido Hooiveld ★ 4.1k • written 5.6 years ago by naf • 0

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affy intensity probes

updated 8.3 years ago by James W. MacDonald 67k • written 8.3 years ago by m_punisher6 • 0

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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

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Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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