Bioconductor Pseudotime

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tradeSeq pseudotime

updated 20 months ago by Koen Van den Berge ▴ 180 • written 24 months ago by fluentin44 • 0

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Pseudotime testPseudotime TSCAN SingleCell OSCA

2.2 years ago Guandong Shang ▴ 40

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pseudotime monocle dimensionality

4.9 years ago pbachali ▴ 50

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Comment: makeContrastsDream for Interaction by abadgerw • 0

Thank you! I will try this out.

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0

Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…

Comment: ANOVA like approach of edgeR by Talip ▴ 10

I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…

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Comment: makeContrastsDream for Interaction

Answer: ANOVA like approach of edgeR

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